MmuEX0051351 @ mm10
Exon Skipping
Gene
ENSMUSG00000038775 | Vill
Description
villin-like [Source:MGI Symbol;Acc:MGI:1201781]
Coordinates
chr9:119061895-119062704:+
Coord C1 exon
chr9:119061895-119062094
Coord A exon
chr9:119062442-119062520
Coord C2 exon
chr9:119062606-119062704
Length
79 bp
Sequences
Splice sites
3' ss Seq
TGGATACATGTCCCCCCCAGTGT
3' ss Score
5.04
5' ss Seq
GACGTAAGG
5' ss Score
7.23
Exon sequences
Seq C1 exon
GCTCTGACCCTGACTTGCAACCTCAGAGACAGGGAGCGAGGTGGCCGTGCCCAAATTGCTGTGGTAGATGCGGAGAATGAAGCCACCAACCTTCTGCGCATCATGGAGGCTGTGCTGGGCTGCAGATCAGGCAGCCTGTGTCCCTCTGTACCCAGCAACAGTGTTAGCCAGCTACAAAAGGCCAATGTCCGCCTCTACCA
Seq A exon
TGTCTGTGAGAAGGGGACAGACCTGGTGGTCCAGGAACTGGCGACCCGCCCACTGACCCAGGACCTCCTGCAAGAGGAC
Seq C2 exon
GGTTGCTATCTCCTGGACCAGGGTGGCTTCAAGATCTACATGTGGCAGGGACGAAAGTCCAGCCCCCAGGAGAAGAAGGCTGCCCTCAGCAGGGCTGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000038775-'12-15,'12-14,14-15
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.015 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0062617=Gelsolin=PD(40.8=46.3)
A:
PF0062617=Gelsolin=PU(20.8=59.3)
C2:
PF0062617=Gelsolin=FE(41.6=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACCTTCTGCGCATCATGGAG
R:
TCGTCCCTGCCACATGTAGAT
Band lengths:
167-246
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types