GgaEX6018218 @ galGal4
Exon Skipping
Gene
ENSGALG00000005763 | VILL
Description
villin-like [Source:HGNC Symbol;Acc:HGNC:30906]
Coordinates
chr2:4580299-4581319:+
Coord C1 exon
chr2:4580299-4580498
Coord A exon
chr2:4580578-4580656
Coord C2 exon
chr2:4581221-4581319
Length
79 bp
Sequences
Splice sites
3' ss Seq
TCGCTGGCTCTGTCTTTCAGTGT
3' ss Score
9.16
5' ss Seq
GAGGTGAAA
5' ss Score
2.91
Exon sequences
Seq C1 exon
GGCCTCGCACTGGCTCGTAGCATCAGGGACAGCGAAAGAGGCGGCCGCGCTCAAATCGGCATCATCGACAACGAGAAGGACTCCCCAGACCTCCTGAAGATCATGAAGATGGTGCTGGGTGAGAGGCGTGGGGAGCTCCGGGATGCCATCCCGGACACGAAAGCAGATGAGCTGCAGAAAGCAAACGTCCGGCTCTACCA
Seq A exon
TGTCTACGAGAAGGACAACGACCTCGTGGTACAGGAGATAGCCACTCGGCCCCTGACACAAGACCTGCTCCAGCATGAG
Seq C2 exon
GACTGCTACATTTTAGACCAAGGTGGCTTTAAGATTTACGTCTGGAGAGGAAAGGCCTCCAACCAGGAGGAGAAGAAAGCAGCCTTCACTCGAGCTGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005763-'12-11,'12-10,13-11=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.075 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0062617=Gelsolin=PD(40.8=46.3)
A:
PF0062617=Gelsolin=PU(20.8=59.3)
C2:
PF0062617=Gelsolin=FE(41.6=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAAGATGGTGCTGGGTGAGA
R:
AGGCTGCTTTCTTCTCCTCCT
Band lengths:
182-261
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]