MmuEX0051351 @ mm9
Exon Skipping
Gene
ENSMUSG00000038775 | Vill
Description
villin-like [Source:MGI Symbol;Acc:MGI:1201781]
Coordinates
chr9:118970595-118971822:+
Coord C1 exon
chr9:118970595-118970705
Coord A exon
chr9:118971560-118971638
Coord C2 exon
chr9:118971724-118971822
Length
79 bp
Sequences
Splice sites
3' ss Seq
TGGATACATGTCCCCCCCAGTGT
3' ss Score
5.04
5' ss Seq
GACGTAAGG
5' ss Score
7.23
Exon sequences
Seq C1 exon
GTGGCCTTGTCCTGGAACAGCTTTAACAAGGGGGACATCTTCCTGTTGGACCTGGGCAAGGTGATGATCCAGTGGAATGGACCCAAAGCCAGCATTTCTGAGAAAGCACGG
Seq A exon
TGTCTGTGAGAAGGGGACAGACCTGGTGGTCCAGGAACTGGCGACCCGCCCACTGACCCAGGACCTCCTGCAAGAGGAC
Seq C2 exon
GGTTGCTATCTCCTGGACCAGGGTGGCTTCAAGATCTACATGTGGCAGGGACGAAAGTCCAGCCCCCAGGAGAAGAAGGCTGCCCTCAGCAGGGCTGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000038775_MULTIEX1-2/2=C1-C2
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0062617=Gelsolin=FE(47.4=100)
A:
PF0062617=Gelsolin=PU(20.8=59.3)
C2:
PF0062617=Gelsolin=FE(41.6=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAAGGGGGACATCTTCCTGT
R:
GAGGGCAGCCTTCTTCTCCT
Band lengths:
173-252
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: