BtaEX6093316 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000012963 | VILL
Description
villin-like [Source:HGNC Symbol;Acc:HGNC:30906]
Coordinates
chr22:11484616-11485443:+
Coord C1 exon
chr22:11484616-11484815
Coord A exon
chr22:11485174-11485252
Coord C2 exon
chr22:11485345-11485443
Length
79 bp
Sequences
Splice sites
3' ss Seq
TCTGCATGCCTGTCCCCTAGAGT
3' ss Score
7.95
5' ss Seq
GAGGTGAGG
5' ss Score
8.41
Exon sequences
Seq C1 exon
GGCCTGTTCCTGACCCACAGCCTCCGGGACAGGGAGCGTGGCGGTCGTGCACAGGTCAGCGTGGTGGATGATGAGGCTGAAGCCACTGACCTCATGGAGATCATGGAAGCTGTGCTGGGCCGCAGAGTGGGCAGCCTGCACGCCGCCATGCCCAGCAAGAGGATGAATCAGCTGCAGAAGGCCAATGTCCACCTCTACCA
Seq A exon
AGTCTGCCAGAAGAGCAAGGATCTGGTGGTCCAAGAGTTGTCGACCTGCCCATTGACCCAAGACCTGCTTCAGGAGGAG
Seq C2 exon
AACTGCTACATCCTGGATCAGGGTGGCTTCAAGATCTACGTGTGGCAGGGACGCCGGGCCAGCCTCCAGGAGAGAGGGGCTGCCTTCAGGAGGGCTCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000012963-'13-11,'13-9,14-11=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.045 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0062617=Gelsolin=PD(40.8=46.3)
A:
PF0062617=Gelsolin=PU(19.7=55.6)
C2:
PF0062617=Gelsolin=FE(42.1=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCAGCGTGGTGGATGATGAG
R:
TCTTGAAGCCACCCTGATCCA
Band lengths:
180-259
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]