DreEX6094761 @ danRer10
Exon Skipping
Gene
ENSDARG00000059097 | nktr
Description
natural killer cell triggering receptor [Source:ZFIN;Acc:ZDB-GENE-030131-1725]
Coordinates
chr24:20507443-20508029:-
Coord C1 exon
chr24:20507922-20508029
Coord A exon
chr24:20507776-20507820
Coord C2 exon
chr24:20507443-20507470
Length
45 bp
Sequences
Splice sites
3' ss Seq
TTTTTTTTTTTTTTGCTTAGGCA
3' ss Score
9.2
5' ss Seq
AAGGTAAGC
5' ss Score
10.22
Exon sequences
Seq C1 exon
GCGAGAAAGGCAGTGGCAAAGCTACAGGGAAAAAATTATGCTATAAAGGTTCAACTTTCCATCGAGTTGTAAAGAACTTCATGATCCAGGGGGGTGATTTTACTGAGG
Seq A exon
GCAATGGAAGAGGGGGAGAATCTATATTTGGTGGTTTCTTTGAAG
Seq C2 exon
AGATTGTGGTCTTTTGCAAAATGAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000059097-'7-6,'7-5,8-6=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0016016=Pro_isomerase=FE(38.3=100),PF132061=VSG_B=PD(70.5=83.8)
A:
PF0016016=Pro_isomerase=FE(16.0=100)
C2:
PF0016016=Pro_isomerase=PD(7.4=70.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGAAAGGCAGTGGCAAAGCT
R:
CTTTTCATTTTGCAAAAGACCACA
Band lengths:
134-179
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]