MmuEX6069973 @ mm9
Exon Skipping
Gene
ENSMUSG00000032525 | Nktr
Description
natural killer tumor recognition sequence [Source:MGI Symbol;Acc:MGI:97346]
Coordinates
chr9:121637696-121640683:+
Coord C1 exon
chr9:121637696-121637803
Coord A exon
chr9:121638754-121638798
Coord C2 exon
chr9:121640596-121640683
Length
45 bp
Sequences
Splice sites
3' ss Seq
TTATAACTCATTGTTTTCAGGTA
3' ss Score
8.32
5' ss Seq
AAGGTAAGG
5' ss Score
10.51
Exon sequences
Seq C1 exon
GGGAGAAAGGCCTTGGGAAAACAACTGGGAAGAAGTTATGTTATAAAGGTTCTACATTCCACCGTGTGGTTAAAAACTTTATGATTCAGGGTGGGGACTTCAGTGAAG
Seq A exon
GTAATGGAAAAGGTGGAGAATCAATTTATGGTGGATACTTTAAAG
Seq C2 exon
ATGAAAACTTTATTCTCAAACATGACAGAGCGTTCCTTTTGTCAATGGCAAATCGAGGGAAACATACCAATGGTTCCCAGTTTTTCAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000032525-'6-8,'6-6,7-8=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.026
Domain overlap (PFAM):
C1:
PF0016016=Pro_isomerase=FE(27.5=100),PF132061=VSG_B=PD(66.7=70.3)
A:
PF0016016=Pro_isomerase=FE(16.0=100),PF132061=VSG_B=PD(19.7=75.0)
C2:
PF0016016=Pro_isomerase=FE(17.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCTTGGGAAAACAACTGGGA
R:
GCCATTGACAAAAGGAACGCT
Band lengths:
148-193
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: