GgaEX1039793 @ galGal3
Exon Skipping
Gene
ENSGALG00000005282 | NKTR
Description
NA
Coordinates
chr2:1843604-1846114:+
Coord C1 exon
chr2:1843604-1843711
Coord A exon
chr2:1844488-1844532
Coord C2 exon
chr2:1846027-1846114
Length
45 bp
Sequences
Splice sites
3' ss Seq
TCATGCTTTTTAATGCACAGGTA
3' ss Score
7.88
5' ss Seq
AAGGTAAGA
5' ss Score
10.57
Exon sequences
Seq C1 exon
GTGAAAAAGGAATTGGCAAAACAACTGGGAAGAAGTTGTGCTACAAAGGCACTACGTTCCATCGCGTGGTTAAAAACTTCATGATTCAGGGTGGGGACTTCAGTGAAG
Seq A exon
GTAATGGAAAAGGAGGTGAATCTATTTATGGTGGCTATTTTAAAG
Seq C2 exon
ATGAAAACTTTATTCTCAAACATGACAGAGCGTTCCTTTTGTCAATGGCAAACCGAGGGAAACATACCAATGGTTCCCAATTTTTCAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005282-'3-9,'3-7,4-9=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.022
Domain overlap (PFAM):
C1:
PF0016016=Pro_isomerase=FE(38.3=100),PF132061=VSG_B=FE(59.0=100)
A:
PF0016016=Pro_isomerase=FE(16.0=100),PF132061=VSG_B=PD(19.7=75.0)
C2:
PF0016016=Pro_isomerase=FE(17.5=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTACAAAGGCACTACGTTCCA
R:
TGTTTCCCTCGGTTTGCCATT
Band lengths:
133-178
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]