GgaEX1039793 @ galGal4
Exon Skipping
Gene
ENSGALG00000005282 | NKTR
Description
natural killer cell triggering receptor [Source:HGNC Symbol;Acc:HGNC:7833]
Coordinates
chr2:1940509-1943019:+
Coord C1 exon
chr2:1940509-1940616
Coord A exon
chr2:1941393-1941437
Coord C2 exon
chr2:1942932-1943019
Length
45 bp
Sequences
Splice sites
3' ss Seq
TCATGCTTTTTAATGCACAGGTA
3' ss Score
7.88
5' ss Seq
AAGGTAAGA
5' ss Score
10.57
Exon sequences
Seq C1 exon
GTGAAAAAGGAATTGGCAAAACAACTGGGAAGAAGTTGTGCTACAAAGGCACTACGTTCCATCGCGTGGTTAAAAACTTCATGATTCAGGGTGGGGACTTCAGTGAAG
Seq A exon
GTAATGGAAAAGGAGGTGAATCTATTTATGGTGGCTATTTTAAAG
Seq C2 exon
ATGAAAACTTTATTCTCAAACATGACAGAGCGTTCCTTTTGTCAATGGCAAACCGAGGGAAACATACCAATGGTTCCCAATTTTTCAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005282-'7-11,'7-9,8-11
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.033
Domain overlap (PFAM):
C1:
PF0016016=Pro_isomerase=FE(21.7=100)
A:
PF0016016=Pro_isomerase=FE(16.1=100)
C2:
PF0016016=Pro_isomerase=FE(17.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTACAAAGGCACTACGTTCCA
R:
TGTTTCCCTCGGTTTGCCATT
Band lengths:
133-178
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]