MmuEX6069973 @ mm10
Exon Skipping
Gene
ENSMUSG00000032525 | Nktr
Description
natural killer tumor recognition sequence [Source:MGI Symbol;Acc:MGI:97346]
Coordinates
chr9:121728578-121730024:+
Coord C1 exon
chr9:121728578-121728685
Coord A exon
chr9:121729636-121729680
Coord C2 exon
chr9:121729997-121730024
Length
45 bp
Sequences
Splice sites
3' ss Seq
TTATAACTCATTGTTTTCAGGTA
3' ss Score
8.32
5' ss Seq
AAGGTAAGG
5' ss Score
10.51
Exon sequences
Seq C1 exon
GGGAGAAAGGCCTTGGGAAAACAACTGGGAAGAAGTTATGTTATAAAGGTTCTACATTCCACCGTGTGGTTAAAAACTTTATGATTCAGGGTGGGGACTTCAGTGAAG
Seq A exon
GTAATGGAAAAGGTGGAGAATCAATTTATGGTGGATACTTTAAAG
Seq C2 exon
AGAATGTGGTCTTTTGCAAAATGAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000032525-'9-21,'9-15,12-21=AN
Average complexity
A_C2
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0016016=Pro_isomerase=FE(37.9=100),PF132061=VSG_B=FE(59.0=100)
A:
PF0016016=Pro_isomerase=PD(20.0=56.2),PF0016016=Pro_isomerase=FE(26.8=100)
C2:
PF0016016=Pro_isomerase=PD(13.6=80.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGAGAAAGGCCTTGGGAAAA
R:
TCATTTTGCAAAAGACCACATTCT
Band lengths:
132-177
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types