HsaEX0043062 @ hg19
Exon Skipping
Gene
ENSG00000114857 | NKTR
Description
natural killer-tumor recognition sequence [Source:HGNC Symbol;Acc:7833]
Coordinates
chr3:42660512-42663008:+
Coord C1 exon
chr3:42660512-42660619
Coord A exon
chr3:42661156-42661200
Coord C2 exon
chr3:42662921-42663008
Length
45 bp
Sequences
Splice sites
3' ss Seq
AAGTAGGTGATTATTTGCAGGTA
3' ss Score
1.86
5' ss Seq
AAGGTAAGG
5' ss Score
10.51
Exon sequences
Seq C1 exon
GAGAGAAAGGCCTTGGGAAAACAACTGGGAAGAAGTTATGTTATAAAGGTTCTACGTTCCATCGTGTGGTTAAAAACTTTATGATTCAGGGTGGGGACTTCAGTGAAG
Seq A exon
GTAATGGAAAAGGTGGAGAATCAATTTATGGTGGATATTTTAAAG
Seq C2 exon
ATGAAAACTTTATTCTCAAACATGACAGAGCGTTCCTTTTATCAATGGCAAATCGAGGGAAACATACCAATGGTTCCCAGTTTTTCAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000114857-'5-9,'5-5,6-9
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.016
Domain overlap (PFAM):
C1:
PF0016016=Pro_isomerase=FE(27.3=100),PF132061=VSG_B=PD(68.3=75.7)
A:
PF0016016=Pro_isomerase=FE(16.0=100),PF132061=VSG_B=PD(19.7=75.0)
C2:
PF0016016=Pro_isomerase=FE(17.5=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCTTGGGAAAACAACTGGGA
R:
AGGAACGCTCTGTCATGTTTGA
Band lengths:
136-181
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)