DreINT0006795 @ danRer10
Intron Retention
Gene
ENSDARG00000089856 | CIT
Description
citron rho-interacting serine/threonine kinase [Source:HGNC Symbol;Acc:HGNC:1985]
Coordinates
chr5:2255670-2261859:-
Coord C1 exon
chr5:2261754-2261859
Coord A exon
chr5:2255814-2261753
Coord C2 exon
chr5:2255670-2255813
Length
5940 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGA
5' ss Score
10.57
3' ss Seq
TTGTGTTTGTGGCCGCTCAGATG
3' ss Score
5.32
Exon sequences
Seq C1 exon
GTCGGTCGGCGCAGGACTCAACTCTCCTGCCAAGACCAACTCCATGGAAAAAAAACTGCACCTCAAAAGCAAAGAACTGCAAGACACTCAAGACAAATGTCACAAG
Seq A exon
GTAAGAGCACCGACAGATAGCAATCAATCAATAAACCCTCAACTAATAAACTAGAATATCCTTATTGTAAAATTGCAGCACAGAAAATATTTCAGGCTCATCTCTTAGTTTGTCAAAACTCGTTTCAAAGTATCACCACAAGTCGGTTAAATTGTTTTTTTGACACAAATAATTTTGGAGACGAATCTTTTGCTTATTGAATGGACTTTTGATTCACATGTTGTTCTGATCTTAATTCAGTCTCCATTCTTTTAGCTATAGATCAGATGCTGTGTACATTAAGTCTATTAATGATTAAATATATATATATATATATACACTAGGGATGCAACAATACAGTTAGCCCACCGTTCTGGATTGTTTTAGGTTCGGTTCTCATGGCGTGACATGTGTTTTTTTTTATTCTATAGGCAATAGGAACAGTAAGAGGTTAAGGAGAAAAAAGTAAAAATGATTTATTGCAATACTCATTTTGTTTTACTTAAAAGCCAAGAAAAGTAGTTGCTAGTGTATTGTATAAGAAAATGAACACTGAAATCTCACAGCTGCTGGTAGCCCATGTACAAACTGGGGAACACGTAAAATCTAACAATTTGAAGATAAACACACATGAAGCTAATAAAGATGAATTGGCCATTTTAAATCAACATATTTGTACTTCAGTAAACATAAATAAACCAGCTTAATTATCTCGGTGCTGAAAAAATGTGAGACTGTAGTCTGTAATGCGGACTGAGTGCTTTTATAAGATGACAAAAGCCCACATCTCCAATCACCCAAAACGGCTGCAAATCTCCAGCAGTAATCACCCGCACTGCCTTTGTTATTTTATGTGTCTCTTGGAGCCAGTTGGGTTTGTTTGCTTGATAGATTCAGCGAGGGATTGTTGCTGTTTGGAGGACTTTATTACCTTCTCTGCTCTCCTGCTTCAGACAGTGATATTGCTGGGTGATGCACTGCAGATGTGCAGGCATGGTTATACGTGTAAATCAATGCTCGCACACAGTTATTTTATGTTCACCGTTCTTCCTTTTTTTGGCATTATACTTACCGGCAAAACCGAAATGTCCTCACGCTGCAGATTTGAAAAACGGCGGCGCTTTCTCGTACTGTTGCCTCACTTCGCCTGCGCTTCCTTGTACTCTTGCTTAAGCCTCACTTCACCACCGCTGACCATGTTAAAGTGTGGAATGATGGTCAAGCGCCCCCTAACTTTAGAGCATAGTGATTGGATATTTACTCGCGGGGAGGAGTTTCTTCATCTCAGCTCATGGACTTACAGGCACACACAGTCAATTCAGGGAGATATAAAACACACATAAATTATTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAATTCACAAGCGCGTATTAAACTGTGGAGGTCATACCGAACGGTTCAATATTATATTGAAACCGTGGCCTCCCTAATANTATATATATATATATATATATTGCACGTGTCAATGTATATATATTAGTGGTGGGCCGTTATCGGCATTACGTGAGACTCTTATCGCACGAAAAAAATATATATGGCCGTTAATCTATTCCCAAAGCTGGTTTGGGAACAGGGTCTATTCTACGCAAGCTATGATGACTTTCACCTTGATATTTTAGCGCGGATGTATACCTGACCGGTGAGCCAAGACAAAAAAGTGTCCCTTTGAATCAAATCAGCAGGATGCCTGACTTTAACTGCAGTTCGGCAGTTTCACTTTAGCTTATGAACATTTCATTCATGCCCCTGTGACAAACTGGGGTATTAGACGCAAATAAGGGTTAAGGACTGGTGAGAGTGTTATGGAATTTAATAACACATGCCAAATGGAAAGAAAAACTTCCGCATTTCACGATGTGAGTGTGTGTGCCTGCGTGCGGGCGTTTCTTTACTGACAGCTGTGTGTGTGGATCTTGTCGGAAAATATGGCAGAAAGTCGACAGTAGTAGTTTGATAGCGATGTTTACTTCAATAATGCCACTAATATCTGCATACTCCACATGTCTTAATGCCATTTCTGTTTAGTTCAGTTATGACTTTAGTCGCATTAAAGGGCCATGAAACCCCCTCGTTTCAGCAGGGTGTTTTCACACCTCTACTTTGGAAAAAGTCAGAAAAGTGGGCGTGTCCAGCTCTGTTTAGGGGGGAGCGTCGGAGGAAGAAAAGAGGCTTGGTGTGGGAGTGTCTATTTGGGCACGCGCTGACTTTCAGAGTCAAAACACACAGACACACACACACACACACACACACACACACACACACACACACACACACACAGGGGACAAAGTGACTGTGTTTACATGGACATCTGTAGTCGAATTATTTGCCAAATTATTAAATGGTGGACTTTAACTGCAGTTTGACTCTTTCATTCAGGGAATTCATTCATGTCCCTCACGACAAACGAGATATTTGATTCGAGGAGCTGCTCTAAGCGTGTATTTTTCATGCAATGTTTGATACCGCACGGCGAATGAGAGAAAAAAAACCTCTGCATTTCCCGGAAACTTAGATGCACTCGGCAGGTAGCGACTGGTCGCTCACTTACCAAATCTGTAGAGACTAGGGTTGGGCATCTAAGCTATAATGCCGATCCGATACGCATCTCGATACAAAGAATACGATCCGATATATTAGCGATACATTTGTGACATATTGCGATGCAACACGATACGATTCACACCCATATCACGATATGATACGATATTTCAGCACTAACTTATTAGATCAAGTTTATGAGATGATGTGAAAGAGGATGCTGTGCCATTGAATGAGTTTGATTATTTATAAACCAAGCAAAACCAAGACTTTTTTTACAAACTGGCTTTTCTCTCAGAGCCAGAGTGTCAGTTTACAGTAGAGGGCCATTTTAGAACCTATAGCACATATTATTTAAGTATTTTCAAGATAAACAGAATGTATAAGTGCAATATATATTAAAAAAATATGTATGAATTTGCACTCTTTCAACATAAATAAATTTAGCATTGCACAACAAGAATTGTGATTTAACTTTTCAACTATGAAAACAAGTTTTACAAAGATATTTTGCCACTGATTATTCAAAACTTAAGGTTGTGAACTAGCAGTGTTATGCTGCTTTCAAACATCACTGTCACTGTAAACAACAGGCTAATAAAAATATAACAAACCAGCAATCTTCTTGCTGTGAGGTGGTCAAACTACCCACTGTGCCACCGTGACACCCAATTATTTTTATCATTATTATTATTAATATTATTATTATTATAATTAAATAAAAATTAACAGGAGGAGGTGTTTAAAACCTTCGTTCTCCGTGACACTAGGCTGAATATCTTTGCAGATGAACAATGCAATAGCATTCGTTATTGGCGTAGAGCAAGCAGAACTGTTGCGCATGGAAAAAAAAAACTTGCAATGCTTTTCTCACCACTTTTGGAGCTGGTTGAAGCAGTGCGAAAGCCGGGGATGCAGAAACACTGGAAAATGCTTTCACAACAACACCGTGGCGCCGCTTCAAGTGAGATATCAGATTAGTCGTACTGCCCGCGTATTTACAGATGCGCGGCACATTTTGCAAATTGCATCTGTCCTGTCATGTCGTCCATCCTTAAATCCATAATGTTGTCATACTTTAGATTTAGAACTCAGTGGGGAATAAAATGTTTGTTTTGCTTCTCGCGCTTTCTGAGGGCGCTCCACTAGCTTCATCCGCACACCTGATACACTGAGTTGTAGTGAAAGTGTACACATCCGCAAATCCGTTGCTAAGGCTTACTTTATGTAGGTCGATTAAATTATGCGCCAAAAACAGGTTGACAACACTTGTTAATAAATAAAAAATACATTCTATATTAAAAATATAAGCTGTATCTCGGAAAAATCGATTCATCTCGCAAAAACCGATGCATCTCGATTTGCTTCCAAAATTTTATTCATCCTCTGCTGCTCAACCGATGCACTCGCATCGTGCACGCGCATAACCGCGTATCGATACATATCGATTAATCTTCCCATCCCTAGTAGAGACAGGACAATCACCAGCAACTAGAGCCGCGTCTTTATTAAGAGGAGACTACAAGCGAATCCGGATCTCAGCGTTTGCAGATGAGAACAGCTCTCAGGTAAACAATAATCCTCCTTAGACACGTAAGTTATTGTTGTCGAGCGTCGCGTACACTGTTAATCCACACGTGACTGCAGCTGAGCTCTCACAGAGAGAAAATGAAAACAAAACTTCACTGCAGCAAACTATAAAAGCAACACTTCACGCTTGTTTTGCCAACACAACGTGGCGTCTCTGTCGTCTAAACACTGTGACAGTAATGAATATTAATGAAGTTGCACAATAGAGCGCGCTGATTGGTTTGAACCAAGCTTTACTCATGCATTAATGCAGCACACTGTAAGACGTAATAAGACACACTCTGGCACAGACGTCCAGTCTGCACGCTGGAATACACGCTATTATGTCATGACCGTGACGCAGCTTCAAAAATTAGTTTCAAACCGGAAGAACGAATTTGCTTGAAATAACACAAAAACAACCAATTTACACTTTTTAGTGAAATATAGGTGTCCTAATAGTGTTTTTAGCAGTGTGGGACACATATACCACTGTCAACAGCTCAACACCTGTGTTCTGGTGTTTTTCATTCATGAAAAATTACCTGAATAAACAGAAACACATCTTATTGAACATCTTTATTTTCATCGACAATTATCATAGTAGAACAGTTTCTCAAGCAGTTTGTGATGCATTTTGGAAACAGGAGATGAGCCCCTGGTCCACTGCGCCGTCTGGCTTGAGAAACCCGTTCTCAAAGACTTATTATTTGGGCAGCACACATATTCTCAATGCCTTCGGCAGAATTCAAATGAGCCTTTTTAATCTAGATTAATTCCGAGATTAATCTAGATTTTAAAAAGTAATCTATGCCCTCCATAATATAAATACATATGTACACGTAGGATGCCTAATATGGTAATTCACAAAATTGTTCGCAAATTTTTGGGAATTACCACCACAACATCAATCATTTCTATAGCAAAAAAAAAAAAAACTTGAAAAACTAAGGGGTCTGTTTAGAGGCTATTCTGTAAACATTTTAGCAATTTTTTGTTGTTGTTTTAAAGCCATTGGTTTTTATTTTTATTTGGTGACATTACTAGTATTAGAGATGATTGGTTAAACAGTATACTGATATGTCATGTTGCAAAACCATATTTATACTAGATAAAACTTTACACTGAATATTGCTTTGTCTAAACGAGAATCCTCAGTGCAGCTCTAAGCTTTAATTGAGAGTCACTTATTTGGTTCCCATCATAGTTGAGCGTTGGGCTGCAAAATATATCACAATTATTGTAATCGAGATAATATTATATGCAATATACGTATTGCAGACATGTACGATAAACAACCAATGCAAAAAATAAACGTCATTTAAGTTTGACCAATCAGATCGGGCTGTTCTATCTTTAGCCCCACCTCCTTAGTAGTTGCTGTTCTGCTATTGGCTGGAGTCCAGAGCTGAACTCAAAGGCGGGAAAATGACAACAGCCAATCAGAGTCAGAATATCTGCAGAGGTTTTGACACATTCACAGTGTTTTCAAGACTAAATGTTTGCACCTCAACACTCAGTACCGTTTTTAGTCTGAATTACAATTAATTAGTTCTTAAAAATATCTTTACCTGTTTATTTTAATATCATTACATTAATAAATGATCTAAAAACATAGCTAACAAAATAACATTTTTTTAAGAAATATTATCACTCAACAACATCTCATAATCTGATATACTGAGGTGATGGTTGTGTTGTCGGAGCGCTGCTGTAAAATGCATTTAGACCTGGTGCTTGTGTTTGTGGCCGCTCAG
Seq C2 exon
ATGGAGCAGGAGATCTCGCGGTTTCAGCGTAAAATGACTGATCTGGAGTCAGTCCTCCAGCAGAAAGATGTGGAGCTCAAAGCCTCAGAGACGCAGAGGAGCATCCTGGAGCAAGACCTCGCCACCTACATCACTGAATGCAGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000089856:ENSDART00000122274:11
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.917 A=NA C2=0.312
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]