HsaINT0035519 @ hg19
Intron Retention
Gene
ENSG00000122966 | CIT
Description
citron (rho-interacting, serine/threonine kinase 21) [Source:HGNC Symbol;Acc:1985]
Coordinates
chr12:120221712-120222869:-
Coord C1 exon
chr12:120222764-120222869
Coord A exon
chr12:120221856-120222763
Coord C2 exon
chr12:120221712-120221855
Length
908 bp
Sequences
Splice sites
5' ss Seq
AAGGTATTT
5' ss Score
7.64
3' ss Seq
TGTCGATGTGTTTATTTCAGATG
3' ss Score
10
Exon sequences
Seq C1 exon
GTCTGTTGTGTCGGGTCTGGACTCCCCTGCCAAGACTAGCTCCATGGAAAAGAAACTTCTCATCAAAAGCAAAGAGCTACAAGACTCTCAGGACAAGTGTCACAAG
Seq A exon
GTATTTATTTCCGCAGCCGGCCTCCTTCCTTGCTCCAGGATCCTCCCGTCCGTATATGCCAAGGGATCCGCCCGGGGCCGCTGCTGGCTCTGAGCCGCCTGATCCGTAGAGAGTGAGGCGCTCCTGCCTTCGCTGAAGTCGCGCCTCCAGCAGCTCAGAGGGAGATGAATTCGGGCCTTGCTGTTGCTGTAAATCCTTTAAATCTAAACCAGAGGAGGCCCTGGATTTAAACAGTCCGTTTCTCAGCATGACCCAGCCAGATGTCTGCTTCTTCCGGCAGGTGGCCTGGGTCCTCACCTGTGGCTGAGATACATCCCATCTGCTTTGAGTGATGCGAAGTCTCTCTTCCTAGTCTTTTAAAACTCCTGCTTATGTCACTGCGGCCACTGTGTTGATTACGCTCAACGTCTCTTAACATTCACTGTTCCTGCCCAGAGGCAACGCTCTGGAAACTAATAAGTCACTGCTTGCCTGGGACTCCTAAGAGTGCAGACGAATAAATATCTCCTTGCCCTGTCCTGGATTTGTCCTCTAGATCTTTGCAAGGAGATGGGGGGGGATCAAGATGGATTTGGGATAAAATTAAAGTGACGTCTGCAAAAACAAAACAAAAACAAAAGCAAACAGGTGAAAAATGATGATTGTGGCTTCCTTGCTAACTGGGTTAGAGAAGTGATCAAGTGTGAACCGGGACTTGAATGAGAGGAGTGACTTAGCATTTGGTGACTGTCCTTAACGAAGAACTGTGCGCTCCTGGGCGAAGAAACAATGGTATTTCCATCCCAACTTAACTTTTGGCGAATTAGCCTTAGCCCAGACCACCAGGTGGTTTCGGAGGCTACTTGAGATGTGATTGCTCCTAATGAACCTCCACGGGCCTTTTTAACCTGTCGATGTGTTTATTTCAG
Seq C2 exon
ATGGAGCAGGAAATGACCCGGTTACATCGGAGAGTGTCAGAGGTGGAGGCTGTGCTTAGTCAGAAGGAGGTGGAGCTGAAGGCCTCTGAGACTCAGAGATCCCTCCTGGAGCAGGACCTTGCTACCTACATCACAGAATGCAGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000122966-CIT:NM_007174:11
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.444 A=NA C2=0.146
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTGTTGTGTCGGGTCTGGAC
R:
TGCATTCTGTGATGTAGGTAGCA
Band lengths:
247-1155
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)