RnoINT0036602 @ rn6
Intron Retention
Gene
ENSRNOG00000001143 | Cit
Description
citron rho-interacting serine/threonine kinase [Source:RGD Symbol;Acc:70878]
Coordinates
chr12:46413490-46414434:-
Coord C1 exon
chr12:46413827-46414434
Coord A exon
chr12:46413634-46413826
Coord C2 exon
chr12:46413490-46413633
Length
193 bp
Sequences
Splice sites
5' ss Seq
ATGGTATTT
5' ss Score
3.85
3' ss Seq
CGCGCGCGTGTTTATTTCAGATG
3' ss Score
9.88
Exon sequences
Seq C1 exon
GAATTCGGGCCTAGACATTGCCATAAATCCTTTAAATCTTTACCAGAGGAGGCCCTGGATTTAAAACGGCCCGTTTCTCAGCACGACCCAGCCCGATGTCTGCTTCTTCCGGCAGGCGGCCTGGGTCCTCCTCACCTGGGGCTGAGAAGCGTCCCATCTGCTCGGAGTGAGGCGAAGTCTGTCTTCCTAGTCCTTTAAAACTCCTGCTTATGTCACTGCGGCCACTGTGCTGACTATGCTCACGTCTCTTAATGCAACTCTCTGAAAGCCCAATAAGAAACCACTGCTCGTGTGGGACTCCTAAGAGTTCAGACGAATCATTGTCTCTCAGCCTGGCCCTGGATCTGTCCTCTAGGTCTTTGCAAGGAGATGGGGGGACCAAGATGGATTTAGGATAAAATTAAACTGGCATCCGTATAAGCCAGACCGATACCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGCAAACAGGTGGACCATGATGGCGGTGGCTTCTTGGCTCAGTGTGCTAGAGAAGTGACTGCGCAGCAGGACTTGGATGACAGGACTGACAGCCTTTGGTGACTGTCTTTTTGAAGAACTGTACGCTCCTGGGTGAAGAAGCAATG
Seq A exon
GTATTTCCATCCCAGCTCTTGGCGAATTAGCGGTAATCGCCCCGCAGACCACCAGGTGGCCTGGGGCCCCGCCCCCCGCTGACGCGTAACTGCCCCCGGCAAGCGCCCGGATCCTGCCCCCCCCCCCCCCCCGCAAGCGCCCGCCTCCTGCCCCCTGGGTCCCTTTTAACCCGCGCGCGCGTGTTTATTTCAG
Seq C2 exon
ATGGAGCAGGAAATGGCCCGGTTGCATCGCAGAGTGTCAGAGGTGGAGGCTGTGCTTAGTCAGAAGGAGGTGGAGCTGAAGGCCTCTGAGACTCAGAGATCCCTCCTGGAGCAGGACCTTGCCACCTACATCACAGAATGCAGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000001143:ENSRNOT00000041281:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.122
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCATCCGTATAAGCCAGACCG
R:
CACCTCTGACACTCTGCGATG
Band lengths:
245-438
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]