GgaINT0008808 @ galGal4
Intron Retention
Gene
ENSGALG00000007354 | CIT
Description
citron rho-interacting serine/threonine kinase [Source:HGNC Symbol;Acc:HGNC:1985]
Coordinates
chr15:9589631-9590758:+
Coord C1 exon
chr15:9589631-9589736
Coord A exon
chr15:9589737-9590614
Coord C2 exon
chr15:9590615-9590758
Length
878 bp
Sequences
Splice sites
5' ss Seq
AAGGTATTT
5' ss Score
7.64
3' ss Seq
CCTCTTGATATTTATTGCAGATG
3' ss Score
8.46
Exon sequences
Seq C1 exon
ATCTGTGCTTTCAAGTGTGGATTCTCCAGCAAAGGTCAGCTCCATGGAAAAGAAACTTCTTCTCAAGAGCAAAGAACTCCAAGACGCCCAGGACAAGTGTCACAAG
Seq A exon
GTATTTATTTATCCAGTTGGCCGTCTCCATTGCTCAAGGAATCTGCAACCACTGTGTGTCCAGGGATCTGTCAGATGCTGCTGATCATCCAGATTCGTGGTGGGCAAAGTGCTTTTCCTTCAGTGAGGTGGCTTCCTGTCCAATACAAAGGGAGATGAATTTAGGCCATGCTGTTGCTGTAGATACTTTTATCATAACAAGAAGCGGCTCTGGATTTTAAACAGTCCTTTTCTCAGCGTGACATAGACGACTGCTTCTTCCTGCAGGCCTTGCCTTGTCTTCGTCATATGCGCAATTACAGCAGCACTGTTCTGAGGTTCTCTGTTCCTAGCTCATCAGCTTCTGCTTACATAACTACTGTCGTGTCACTGGTTATGGTGAACATCTTGTAACAGTTGCTGTGCTCCAATAAAGGGAACCTGGTGGAGTCTTTTAAAGCTCACTGCTCGATTGAGACTTTTATGAGAATTCAATTACTTTTCTCCTTGGTCTGTTCTGGATTTGACCATTTGTTCCTGACAAGGAGATGGGGGGAAACCATCTCCTGATCCAGCATGGATTTGGGATAAGGTTAAAGTGAACCATCTCTGCAAGTCAGGTGAAAAATGATTGTGGCTTCTTTGCTAACTGGTGTTCGAAGAATGACTGAATATGAACAATCAGCTTGAATGAATGGGGTGACTTAGACTTACTACTTGTCCTTAAGAAGAACTGTGCATTCCTGGAGCAGAGACAATGGTATCGGAATTTAAACACCTTTTGGAGCAATATAGCATAGAAGTCTCTTGGAGGCAAATTCTTCTCAAACAGAGCTCTGAAAGTAACAGTTAACAAAGCTTTTGAAGCCCCCCTTTATAACCTCTTGATATTTATTGCAG
Seq C2 exon
ATGGAGCAGGAAATGACGCGGTTGCACCGGAGAGTGTCAGAGGTGGAGGCTGTACTTAGCCAAAAGGAGGTGGAACTGAAAGCCTCTGAGACCCAGCGATCCCTCCTGGAGCAGGACCTGGCCACCTATATCACAGAATGCAGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000007354:ENSGALT00000011895:11
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.194 A=NA C2=0.146
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTGTGCTTTCAAGTGTGGAT
R:
GCATTCTGTGATATAGGTGGCCA
Band lengths:
246-1124
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]