DreINT0007141 @ danRer10
Intron Retention
Gene
ENSDARG00000088492 | CNTRL
Description
centriolin [Source:HGNC Symbol;Acc:HGNC:1858]
Coordinates
chr5:62721805-62723608:-
Coord C1 exon
chr5:62723482-62723608
Coord A exon
chr5:62721970-62723481
Coord C2 exon
chr5:62721805-62721969
Length
1512 bp
Sequences
Splice sites
5' ss Seq
CAGGTAACA
5' ss Score
8.88
3' ss Seq
GCATTGTGTGTATTGTGCAGGTG
3' ss Score
8.55
Exon sequences
Seq C1 exon
ACTGGAAATTGCCGAGAAGGAGCTCCGAGAGACGCAGAGCATGGAGGTGAAACTGTTGCAGAGCTGCAGAGAGATGGAAAACAGCCTAGCACAGCGCAAAACAAAACTGGATGAAGTCAACACTCAG
Seq A exon
GTAACACTAGCTGTGATAAGTAATGTTCTTGAGTAGAAAATCAGCATATTAAAATGATTTCTAAAAAAATATGTGTCACTAAAGACTGGAGTGATAGCTTCTGAAAATTTATTTATGCTGTCACAAGAATAAATAACATTTTATATTTTCTAAAAACAGATTGGCTGTGTCCAAAATTACATTCTTCCAAACTATATAGTACGCTAAAATCAGTCTGCGAGCCGAGTAGTATGTCCGTATTCATAGAATTCGAAAATCAGTATGCGAGAAGTACCCGGAAGACCTTTTACTTCCGGCGAGATTCTGAAATGCGCATCCAATGGACACTACGCTCTCCCATGATGCACTGCAAGGAATATCATGAATAGGAGTGAAGCAACGCAAACGACGTTGGTAGGTCTCGTGTTGATGACAAAATAGATGTAGTACGTTCGAGTTCATACCACTCACATTCATACTGTATAGAACATACTTTTCTAACGGTTGAGTAGTACAATTAAATTCGAATGCAGTAACTACTGAGTAGTAGGCGATTTAGGATGCAGTCATTGTTTAAATTGTAATAATATTTCATGCTATAAATAAGTATCGGTCAAGACTTTAAAGGTTGACCTATTATGCTTTTTTTTTTTAACAAGATGTAAAATAAGCCTCTGACATCCCTACAGTGTGTGTGTGAAGTGTCAGCTCAGTATAACCCACAAATATTGTTATTACTCTTTTTAACTGTGTTTTTATTACACTTTTTATAAGCATAGTATACACATAACATTTACTTTACAAAAAATAAATAAATATATAAAAAATAATAGATCAATTTTAATAATAAATAATAATGGCAGCTTAAAAAAGATAATACATTATGAAAGGAAGAAAAAAAAAGATAAATAAATAAATAAACTCCAATATAAGGAAAATAACTACAACAAATCTCCTGACAACGTTTCAAAAGTCAAGTGAAATATGTTTTGATTAATGCCCATGACTGTTGGAAAATGTCTACTTTTATCTGCAAATCTGCAGTCATTTTCTCATATATATATATATATATATATATATATATATATATATATATATGTATAATTTTATAACTTTTTTAATTTGCCCCTTTTAGGCTGTTGCCATATATTGTGCCATTTTGGTGACTTTCACTTTAAAATTCAAATGAGATTGTGCTCTTTTTAAAATAGGGCGGAGCTACAAACTGCTTCTCACTCAGGGCTGTCTATGCTAATGAGGGAGAGATTGTCACTAATGGGCGGGGCATTCCCCCTCTGGTGACATGTAGAACAGAAAGAATGTCAATCAAAGTGTTTCTGCAGACTGTTTTTATCAAGTGTGATTATAACTATTATATGCTGACTACATTCACACACTGTTGCCACACAACTGTGTTTAAACCACTTTTACATAACAGGTCCCCTTTAAAATATAATCAATTTAAAAAACTGATCCCAGTCTTTTGAACAGTAGTGTGTAAATGAAAAGTATTGCATTGTGTGTATTGTGCAG
Seq C2 exon
GTGATGTTGCAGCAGAAGGAGCTGTCTTTGCTGGACAGGAAGCTGGAGCAGTGGAAACGGGAAGAGGAAGTGTTGAGAGTTAGTGTGGAGCAGCACAGGCAGGCCCTGCTGGATGTGCTCAGACAGGGAGAGGAGGATGCGAAACTCTTGCAACAACGTGTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000088492:ENSDART00000131064:11
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.279 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF041569=IncA=FE(37.5=100)
A:
NA
C2:
PF041569=IncA=PD(1.8=3.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGAAATTGCCGAGAAGGAGC
R:
ACACGTTGTTGCAAGAGTTTCG
Band lengths:
286-1798
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]