RnoINT0038570 @ rn6
Intron Retention
Gene
ENSRNOG00000022015 | Cntrl
Description
centriolin [Source:RGD Symbol;Acc:1305317]
Coordinates
chr3:14353960-14354402:+
Coord C1 exon
chr3:14353960-14354086
Coord A exon
chr3:14354087-14354237
Coord C2 exon
chr3:14354238-14354402
Length
151 bp
Sequences
Splice sites
5' ss Seq
CAGGTATGA
5' ss Score
9.46
3' ss Seq
CTTGCCATCTCCCTTTTCAGGTG
3' ss Score
13.19
Exon sequences
Seq C1 exon
GCTTCAAAGTCTGCAGAGAGACATCAAGGCAGCGGAAGTCAATGAGGATCACCACCTTCAGGTTCTTAAGGAATCTGAGAGTCTCCTTCAGGCCAAGAGAGCTGAGCTGGAAACACTGAAAAGCCAG
Seq A exon
GTATGACAACAGACACATGGAAACGACTATTTTAAATGTATTTTGGATTGCTGACTAAGGCTTATTTGGTTGTAGAAAAGATGGAAAGATACAAACTAAAGTGTAAAGAATACATGTGTCCTCGAGTCGGACTTGCCATCTCCCTTTTCAG
Seq C2 exon
GTGACAAGCCAGCAGCAGGAGTTGGCTGTCCTAGACTCACAGCTGGGGCACAGAAGGGAAGAGCTGCTTCTACTCCAGGACAGCCTCACCCAGGCAAAAGCTGACCTCCAGGAAGCCCTGACACTGGGGGAGACGGAAGTTGCCGAGAAGTGCAGTCACATCAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000022015:ENSRNOT00000007776:28
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.047 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGGCAGCGGAAGTCAATGAG
R:
ACTGCACTTCTCGGCAACTTC
Band lengths:
258-409
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]