MmuINT0034552 @ mm9
Intron Retention
Gene
ENSMUSG00000057110 | Cep110
Description
centrosomal protein 110 [Source:MGI Symbol;Acc:MGI:1889576]
Coordinates
chr2:35016311-35017613:+
Coord C1 exon
chr2:35016311-35016437
Coord A exon
chr2:35016438-35017448
Coord C2 exon
chr2:35017449-35017613
Length
1011 bp
Sequences
Splice sites
5' ss Seq
CAGGTATGA
5' ss Score
9.46
3' ss Seq
CTTGCCATCTCCCTTTTCAGGTG
3' ss Score
13.19
Exon sequences
Seq C1 exon
GCTTCAGAGTCTGCAGAGAGACATCAAGGCAGCGCAACACAGTGAGGATCACCACCTTCAGGTCCTTAGAGAGTCTGAGACTCTCCTTCAGGCCAAGAGAGCTGAGCTGGAAACACTGAAAAGCCAG
Seq A exon
GTATGACAGCAGATACCTGGAAACGACTGTTTTTAAACGTATTTTGGATTGCTGGATCAGGTTTATTTGGTTGTAGAAGAGATGGAAAACTATAAACTGAAGTATTAAGAATACATGTGTCTGGATATCATCCTTAGTGAGGTAACCCAATCACAAAAGAAGTCATTAGATATCCACTCACTGATACGTGGATATTAGCCCAGAAACATAGAACACCCAAGATACAATTTGCAAAACACAGGAAAATCAAGAAGAGGGAAGGCCAATGGGTGGATACTTCATTCCTCCTTAGAATAGGGAACAAAATACCCATGAAAGGAGTTACAGAGACAAAGTTTGGAGCTAAGATGAAAGGATGGACCATCCAGAGATTACCCAGGGATCCATCCCATAATCAGCCACCAAACCCAGACACTATTGCATATGCCAGCAAGATTTTGCTGAAGGGACCCTGGTATAACTGTCTCATATGAGGCTATGCCAGTAGTGCCTGGCAAATACAGAAGTGGATGCTCATAGTCATCTATAGGATGGAACACAGGGCCCCCGATGGAGGAACTAGAGAAAGCACCCAAGGAGCTGAAGGGGTCTGCAACCCTATAGGTGGAACAACAATATGAACTAATCAGTACCCCCAGAGCGCGTGTCTCTAGCTGCATATGTAGCAGAAGATGGCCTAGTTGGCCATCATTGGGAAGAGAGGCCCCTTGGTATTGCAAACTTTATATGCCTCAGTACAGGGGAAAGCCAGGGTCAAGAAATGGGAGTGGGTGGGTAGGGGAGCAGGGTTGGGGTGGGGGGGGGTGATGTATAGGGAACTTTCAGGATAGCATTTGAAATGTATATAAAGAAAATATATAGAAAGAAAGAAGGAAAAGAAAGAAAGAGAGAGAGAGAGAAAGAAAGAAAGAGAGAAAGAGAAAGAGAGAGAATAAAGCAGGCTCAAGGCCAATGGGGGGTGTGGGGAGAATACATGTGTCCTTGAGTCAAACTTGCCATCTCCCTTTTCAG
Seq C2 exon
GTGACAAGCCAGCAGCAGGAGTTGGCTGTCCTGGACTCAGAGTTGGGGCATAGAAGGGAGGAGCTGCTTCTACTCCAGGACAGCCTCGCCCAGGCAAAAGCTGACCTCCAGGAAGCCCTGACACTGGGGGAGACGGAAGTTGCTGAGAAGTGCAGTCACATTAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000057110-Cep110:NM_012018:29
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.256 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF041027=SlyX=PD(27.7=41.9)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTTCAGAGTCTGCAGAGAGAC
R:
TGTGACTGCACTTCTCAGCAA
Band lengths:
287-1298
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: