HsaINT0033505 @ hg38
Intron Retention
Gene
ENSG00000119397 | CNTRL
Description
centriolin [Source:HGNC Symbol;Acc:HGNC:1858]
Coordinates
chr9:121157983-121159019:+
Coord C1 exon
chr9:121157983-121158109
Coord A exon
chr9:121158110-121158854
Coord C2 exon
chr9:121158855-121159019
Length
745 bp
Sequences
Splice sites
5' ss Seq
CAGGTATGG
5' ss Score
9.99
3' ss Seq
TTCCCTTTTCTTTAATACAGGTG
3' ss Score
10.33
Exon sequences
Seq C1 exon
GCTTCAGAAACTACAGAAAGACATAGAGATGGCAGAACGCAATGAGGATCACCACCTGCAGGTCCTTAAAGAATCTGAGGTGCTTCTTCAGGCCAAAAGAGCCGAGCTGGAAAAGCTGAAAAGCCAG
Seq A exon
GTATGGCAATAGACACCTTGAAAAAACAACTGACACAGCACTTTATGATTATAAAAGTAATACATGTTTAATTGTAGAAAAGAATAAATGCGGCTATGTATTATAGTTGTTAAGCATGAAGTCTGAACTAAATTTGAATCCCAACTCAATACAATACTTCTGAATAAAAAAAGTGGGTCTCAAAACATGGTATACTCTATGAGATCATTTCTGTTAAATGCCTTTATCAACACTTATGGTTGTATTTTTAGTCAATACCAAAGTACAAAAGTGGTCATCTGATAAGGGGGGATTTTGAGTATTTTCTGTTGTCTTCCTTTTGCATATCTGCATGGTCTTCTTTTTTTTTTGTAAACAAATACGTATTGTCTTTAAAATTGCAACGAATTTTTAATTTTAAAAATGAATACATTTTAAAAATCTCTGACTAACTTCCATCACCAAGGATGTCAAAATGGAATTAGGGTATAAAAATAAAAGTTCTTGGAAAACTGTAACCTGAGGGATGATCATGATTATCATATTGTTGTTCTTACTGTGATCACTGTGATTTGAGTGGTTTTAAGTATGTGAGCTCAAGGTTTTCATTAGGCATTTCACCCTTGCACTCCTTGCCTGGCTTTTCTGACTCTTGGGGGCTAGGATATTAGCTCCTGATTTTACCTCACAACTAAATTATCTCCAGGTTAGCACTGAGGGCTGTATGGCCTTTGTCAAACTTACTCTTCCCTTTTCTTTAATACAG
Seq C2 exon
GTGACAAGTCAGCAGCAGGAGATGGCTGTCTTGGACAGGCAGTTAGGGCATAAAAAGGAGGAGCTGCATCTACTCCAAGGAAGCATGGTCCAGGCAAAAGCTGACCTCCAGGAAGCTCTGAGACTGGGAGAGACTGAAGTAACTGAGAAGTGCAATCACATTAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000119397:ENST00000373850:19
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.347 A=NA C2=0.109
Domain overlap (PFAM):
C1:
PF041027=SlyX=PD(27.7=41.9),PF079267=TPR_MLP1_2=FE(35.3=100)
A:
NA
C2:
PF079267=TPR_MLP1_2=PD(60.8=87.3),PF140101=PEPcase_2=PU(47.2=90.9)
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTTCAGAAACTACAGAAAGACAT
R:
CCTAATGTGATTGCACTTCTCAGT
Band lengths:
292-1037
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development