GgaINT0126677 @ galGal4
Intron Retention
Gene
ENSGALG00000001513 | CNTRL
Description
centriolin [Source:HGNC Symbol;Acc:HGNC:1858]
Coordinates
chr17:8366537-8367362:+
Coord C1 exon
chr17:8366537-8366663
Coord A exon
chr17:8366664-8367197
Coord C2 exon
chr17:8367198-8367362
Length
534 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGG
5' ss Score
11.08
3' ss Seq
GTTAAATTTTTATATTGTAGGTT
3' ss Score
7.89
Exon sequences
Seq C1 exon
TCTTCAGAAGCTTCAAGGAGATATTCAAGCTGCAGAAGGTAATGAAGAACATCACCTCCAAATGCTCAGAGAAGTGGAGGACATTCTTCAGGTCAAGAAAACTGAACAGGAGAGACTGAAAAATCAG
Seq A exon
GTAAGGCTCATCTGGTTAACTCAGAAGTGTCAGTTTAATTGTTGTTGTTATAACTGGGGACTGTGAAGTGTCTTCTATTCCAAACTGCCTTATCTGAATAATTCTTAATTCTATGATATTTTTTTTTGTTACTGTTGGTAATTTGAATTACTGTTTGTTTTTTTTTGGGGGGGGTGAAGGTAATGTTTTCTATTTTGGGGCTTGTGATAAGTGTGACCCCAATCTTGCCTGCATTTCTGGGTAATAAATGTTACTGCAGAGTTCTTTACGTTCTTATTGCACTTGAGAATAAGAAGCTTAAGTACTTCTGAGGCACAGGGCTGCACTGTTCAGATCAAAACTTAGTTGTCAGTACTGACTCTTCTACAGCAGTGTAGCACATGGAGCTCATTGCTCTGATGGAATTCTTACATGATGTACAATTCAAGTAAATCTGTAAGATGGGGAACAGTATTGCATTTATTTATTTTTTGTATGCGTGTAGCTATAAAACGTGTCCAGATGTGGTAGTAGTGTTAAATTTTTATATTGTAG
Seq C2 exon
GTTACTGCTCAGCAACAAGAGCTGTTGTTTCTGGAGCAGCAGTTAAGTCAAAGGAAAGAACAGCTCCGTGTCCTTCAGGACTGTATTTCTCAAAAGAAAGGTGACCTCAAAGAAGCTCTTCGAGATGGGGAGACTGAAGCAAAGGAAAAACAGCGCCAAATAAGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001513:ENSGALT00000002299:29
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.419 A=NA C2=0.200
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTTCAGAAGCTTCAAGGAGATAT
R:
TTGGCGCTGTTTTTCCTTTGC
Band lengths:
286-820
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]