MmuINT0034552 @ mm10
Intron Retention
Gene
ENSMUSG00000057110 | Cntrl
Description
centriolin [Source:MGI Symbol;Acc:MGI:1889576]
Coordinates
chr2:35160791-35162093:+
Coord C1 exon
chr2:35160791-35160917
Coord A exon
chr2:35160918-35161928
Coord C2 exon
chr2:35161929-35162093
Length
1011 bp
Sequences
Splice sites
5' ss Seq
CAGGTATGA
5' ss Score
9.46
3' ss Seq
CTTGCCATCTCCCTTTTCAGGTG
3' ss Score
13.19
Exon sequences
Seq C1 exon
GCTTCAGAGTCTGCAGAGAGACATCAAGGCAGCGCAACACAGTGAGGATCACCACCTTCAGGTCCTTAGAGAGTCTGAGACTCTCCTTCAGGCCAAGAGAGCTGAGCTGGAAACACTGAAAAGCCAG
Seq A exon
GTATGACAGCAGATACCTGGAAACGACTGTTTTTAAACGTATTTTGGATTGCTGGATCAGGTTTATTTGGTTGTAGAAGAGATGGAAAACTATAAACTGAAGTATTAAGAATACATGTGTCTGGATATCATCCTTAGTGAGGTAACCCAATCACAAAAGAAGTCATTAGATATCCACTCACTGATACGTGGATATTAGCCCAGAAACATAGAACACCCAAGATACAATTTGCAAAACACAGGAAAATCAAGAAGAGGGAAGGCCAATGGGTGGATACTTCATTCCTCCTTAGAATAGGGAACAAAATACCCATGAAAGGAGTTACAGAGACAAAGTTTGGAGCTAAGATGAAAGGATGGACCATCCAGAGATTACCCAGGGATCCATCCCATAATCAGCCACCAAACCCAGACACTATTGCATATGCCAGCAAGATTTTGCTGAAGGGACCCTGGTATAACTGTCTCATATGAGGCTATGCCAGTAGTGCCTGGCAAATACAGAAGTGGATGCTCATAGTCATCTATAGGATGGAACACAGGGCCCCCGATGGAGGAACTAGAGAAAGCACCCAAGGAGCTGAAGGGGTCTGCAACCCTATAGGTGGAACAACAATATGAACTAATCAGTACCCCCAGAGCGCGTGTCTCTAGCTGCATATGTAGCAGAAGATGGCCTAGTTGGCCATCATTGGGAAGAGAGGCCCCTTGGTATTGCAAACTTTATATGCCTCAGTACAGGGGAAAGCCAGGGTCAAGAAATGGGAGTGGGTGGGTAGGGGAGCAGGGTTGGGGTGGGGGGGGGTGATGTATAGGGAACTTTCAGGATAGCATTTGAAATGTATATAAAGAAAATATATAGAAAGAAAGAAGGAAAAGAAAGAAAGAGAGAGAGAGAGAAAGAAAGAAAGAGAGAAAGAGAAAGAGAGAGAATAAAGCAGGCTCAAGGCCAATGGGGGGTGTGGGGAGAATACATGTGTCCTTGAGTCAAACTTGCCATCTCCCTTTTCAG
Seq C2 exon
GTGACAAGCCAGCAGCAGGAGTTGGCTGTCCTGGACTCAGAGTTGGGGCATAGAAGGGAGGAGCTGCTTCTACTCCAGGACAGCCTCGCCCAGGCAAAAGCTGACCTCCAGGAAGCCCTGACACTGGGGGAGACGGAAGTTGCTGAGAAGTGCAGTCACATTAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000057110:ENSMUST00000156933:29
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.256 A=NA C2=0.005
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF041027=SlyX=PD(0.1=0.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTTCAGAGTCTGCAGAGAGAC
R:
TGTGACTGCACTTCTCAGCAA
Band lengths:
287-1298
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types