DreINT0007740 @ danRer10
Intron Retention
Gene
ENSDARG00000009026 | CR388002.1
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:E7F4G7]
Coordinates
chr1:13432237-13432680:+
Coord C1 exon
chr1:13432237-13432337
Coord A exon
chr1:13432338-13432644
Coord C2 exon
chr1:13432645-13432680
Length
307 bp
Sequences
Splice sites
5' ss Seq
AGGGTTAGT
5' ss Score
5.02
3' ss Seq
GTGTTTTGTCCGTCTTTTAGCCA
3' ss Score
8.68
Exon sequences
Seq C1 exon
GTGTCTGCATTTCGAGAGCATGAGAAGGACTCGTATCGACTGAGCTGGGGTGCTGAACATCTGGATAATGTGGTGCTAACCAGCACTCTTCTGCAGTCAGG
Seq A exon
GTTAGTAAGTTGTATACACACTCAGACAGAATTGAAACACAAACACACTTGCCTCCCTGTCACATACAGCAAGAACGTATAAAGTTGTGTATCTTTGGTCAAAACTGGTAAACCTTTTTTTCTTCTCATTATTTTAAACTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTGTCTCTCTCTCTCCTCTCTCTCTCCTTGATTACACTCACGTCATCTCCCTGAATCACTCGGTGTCTCTCTCTGCTCTTCGTGATTGTGTGTTTTGTCCGTCTTTTAG
Seq C2 exon
CCAGTCTACCCCATGCCTTGACCATGACAACAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000009026:ENSDART00000021693:27
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.154
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0079115=ZU5=PU(1.2=7.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]