DreINT0008921 @ danRer10
Intron Retention
Gene
ENSDARG00000063578 | DGKI
Description
diacylglycerol kinase, iota [Source:HGNC Symbol;Acc:HGNC:2855]
Coordinates
chr4:4646401-4649067:-
Coord C1 exon
chr4:4648959-4649067
Coord A exon
chr4:4646497-4648958
Coord C2 exon
chr4:4646401-4646496
Length
2462 bp
Sequences
Splice sites
5' ss Seq
AGTGTAAGT
5' ss Score
8.46
3' ss Seq
CGGTGTGTGTTTGTGTCCAGGAA
3' ss Score
9.17
Exon sequences
Seq C1 exon
GAAAGCCATCTCGCGCTCGGGCCTCCAGCATTTGGGTCCGGCCCAGAATCCCTTCCCTGCCTTGAGCAACGGACCAGCCAAGGAGCTCCGCAACACCGTGGACTGGAGT
Seq A exon
GTAAGTGTTCTGCATGACCTATCTGCTTTATTACTGGAAAAAAATTATTTAAAATAAGGGATTCAAAAAGATAAACAACAAACTCAGAAGTCCGAAGCAGTCGAAAAAGTAAGTTAAAAAGTAAAATCAAAATGTATTAACGAGCTATGATTTTATAAACAGCACTATTCTGCCTGCATCAGGGTGACAATCTTCAGGTGCGTCTGCTGTTCATTTGAAAACTCAATGGTCACATGATCACATTGAATATCTAAACATTACAGGAAATAATACACAGTATACAACACAATAACACAATACAGAACAGACATTATTAATAAAGAAAGGAAGGGAGGAAGGAAAATAAAGTAAGGAAAAAAGGAATGGAAGGAAAGGAAAGGGAGAACAGGAAGGAAGGAAAAGGAAAGAAGGAAGGGAATGAATGGAAAGAATGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAAGAAAAGGAAAGGAAAGAAGGAAGGAAAGAAATGAAGAAAAAGAAGGATGGAAATGAAGGAAACACGGAAGGAAGGAAAGTAAGGAAGGGTGTGAAGGAAGGAAAGAAGGAAGGAAGAAAATGAAAGTGGAATGGAGAGGCAGGAAGGGAATGAAGGAAAGAAGGAAATAAATTAAGAAAAAGAAGGATGGAAATGAAGGAAGAAAAGGAAGTAAGAAAGGAAGCAAGGGAAGGATAGAAAGGAAGGAAGAAAGGAAGGAAGGAGGGAAGCGAAGGAAGGGAAAAAAGGAGGGAAGGAAAGGAATGGAGAGAAGGAAGGAAAGGAAGGAAGGAAGGAAGGAAGGAAGGAGGGAAAGGAAAGGAATGGAATGGAGAAAAGGAAGTAAAGAACGAAAGCAAAAGAAGGAGGGAAGGAAGGAAGTAAAGAAAGGAAGGAAGGAATGAAGGAAAGAAGAAAGTAAAGAAGGAAAGAAGGAAAGAGAGACAGACAGACAGACAGACAGACAGACAGAAAGAAAGTAAGAAGATAATAATAATAATAAGTATTATGCAACATATTTCTATATATATGTATATATATACAGTTGAAGTCAGAATTATTAGCCCCCCTTTGAGTTATTTTTTCTTTTTTCAATATTTCCCAAATGATGTTTAACAGAGCAAGGACATTTTCACAGTATATGTGATAATATTTTTTCTTCTGGAGAAAGTCTTAATTGTTTAATTTCGGCTACAATAAAAGCCGTTTTAAATCTTTTAAACACCATTTTAAGGACAAAATTATTCGCCCCTTTAAGCTAATTTTTTTAAACTGTCTACACCTTAACCTGCCTAGTTAACCTAATTCACCTATTATGTTTACAAATGTGTTAAAGAAACCTTCTCTGCCTTAAACACAAATTGGGGAAAAAATAAACAGGGAGGCTAATAATTCAGGGAGGGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATCAGTGTATCTAACGATAACACTGTCCTGAAACTTCATATAAACCGCATAGCACCACCCAAAACAATAGATCAGAGCACCAAAGCTACTCTTAAAACTCCTGCATAAAGTTGGCCTGTTTAGAACCTGCAGGTGGCTCCAGCTGAAACTGTTGCAGCACGTTTGTTTCTACAAAATGCAATGAACGCCTGACAGACAGTGTTTTTTTAAAATACAGTTTGTGATATTCCAGGACTGTTTGTGCCGAGGATGAGGTTGTGTAATAGTTGTGCTTGTATCAGCACATTTGCGCTGGTGGGTGTGGTGTGTCGTGGCGGGTCCCGCAATGAAGTTTGGCATGGCAAGAGAGAGAAAGTGGTTAATCCAGGTGCGGAGTGTACAGATGGAGCCCAGCGGGAGCTTCCCCTGCGTCTGCACTGGCCTTTCCTTCCCTGTAAGATCCTGACGGGACCAGAGCTGCCATCAAACATTCATGCGCCTTGCTAAAGCTGCAGTGTGTATGTGTGGGTGCATGTTAGTGTTTGTGTACATGCTTGTGCGTGTGTTTGAGTGTGTGTGCATGAGTGTGTGTGTGTGTTTGTGTGACTTTAAACTATTAAAAAATGTTAATAAAAGTGACTTTTTCAAACTTTTCAAGGTTAAAAGTTGTTGGTAGAAAGATCAAAATCCCATAATTAATTAATTCATTCATTTTCCTTTAGCTTTTTAGAGGTCGCCACAGTAGAATGAATCGCCAACTATTCCAGCATATTTAATTGCAGTAATAAGACTAAAAGTGCCAATGAAAGGAGACATAATCATCCTGACATCAGCTTGAGATCTAACAGCGGTGTGTGTTTGTGTCCAG
Seq C2 exon
GAAAACGCAGTGAACGGTGATCATCTGTGGCTGGAGACCAACTGCTCCGGTGAACTCTGCTACCTGGGTGAAGAAACCTGTGTGGCCAAGATCGCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000063578:ENSDART00000093005:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.459 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0013017=C1_1=PU(42.9=75.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]