DreINT0008940 @ danRer10
Intron Retention
Gene
ENSDARG00000063578 | DGKI
Description
diacylglycerol kinase, iota [Source:HGNC Symbol;Acc:HGNC:2855]
Coordinates
chr4:4638173-4639112:-
Coord C1 exon
chr4:4638996-4639112
Coord A exon
chr4:4638248-4638995
Coord C2 exon
chr4:4638173-4638247
Length
748 bp
Sequences
Splice sites
5' ss Seq
CAGGTACGC
5' ss Score
10.12
3' ss Seq
GTCTCTCTCCTGTGTCCCAGAGC
3' ss Score
9.07
Exon sequences
Seq C1 exon
TTCCACAACAAGGTGACGTGTTTCATGCTGCATCAGATTGAGGAGCCCTGTTCACTGGGAGCTCACGCCGGGGTCATTGTCCCACCATCCTGGATTATTAAAGTCCGGAAACCGCAG
Seq A exon
GTACGCTCAACTCCGATGACAGAGTCTGTGTGTGATTAGAGGGCCTCGATACACTGCAAGCCAAACCAAAGATCAAACATAATTTCTAGCTAAATCCAGCTGAAATAATCTATAATTCAGAACTTGTTTTGGCTTTTAAAGTCACCATGAAATCAAAATGGACTCTTCTTATTTTAATATGTAGAGTTGAAGTCAGAATTATGTATACTTTGCCCCCAATTTCTGTTTAAGACCTGAGCCTGAAGCGAGGTTTATGTAGGAGGCTCTAATGGAAAGTGACACCGGACTGTGTTTTAAAGCTGAGCTGTGCGCTCTTGTCTTTCTACACTGATCAGCTTCAGCTTAAATATGCTTGGAATCATCTACATAATTTATATGGAGCTTCTTTCATTGTGTTCTACACTTCTGACATCAGTTTTTCTGTTGCATTGCGAGCTACGATCGATTGAATTGATCAAAAACCGACCCATCATATCAAAAGTCATAGCAGACACTTAGGCCACGCCCATTCTTGTGACATGATTGGTGGATTCATTCATGCATTGATGGGGAGAGTTTTTGAACGGTGGCACAGACATCGATGCCACTTTCAATTCAGGAGTTGCTAAAAGGGAAGTTTCTTTTTTTTTAATGCAAATATTGTTGGAGTAGTTCATCCTCATGTTGTTCTGTGAAATATTCGTTTTTGTAAACCTACAACTTGGTCCTGCTGGTATATCTTAGTCGGCGTCTCTCTCCTGTGTCCCAG
Seq C2 exon
AGCTCATTTAAAAACTCCACTCGGAGGAAAAAACGGACGTCGTTCAAAAGAAGAGCCAGCAAAAAGGGCACGGAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000063578:ENSDART00000093005:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.800
Domain overlap (PFAM):
C1:
PF0013017=C1_1=PD(28.8=43.6)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCCACAACAAGGTGACGTG
R:
ATCCGTGCCCTTTTTGCTGG
Band lengths:
192-940
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]