DreINT0009165 @ danRer10
Intron Retention
Gene
ENSDARG00000094282 | DNAH11
Description
dynein, axonemal, heavy chain 11 [Source:HGNC Symbol;Acc:HGNC:2942]
Coordinates
chr16:19448295-19448684:-
Coord C1 exon
chr16:19448559-19448684
Coord A exon
chr16:19448457-19448558
Coord C2 exon
chr16:19448295-19448456
Length
102 bp
Sequences
Splice sites
5' ss Seq
AAGGTCTTT
5' ss Score
2.08
3' ss Seq
TGTATTGTATGTGTTTGTAGGTC
3' ss Score
8.33
Exon sequences
Seq C1 exon
TTGAGTGAAGAGGAGGTGGAAGGTGTCAGGAAAGCAGTGAAGAGTGAAGTGCGGGATCTAGGTCTGCTGGACAACAACGAAAACTGCTGGAGGTTCTTTATGAATCGAGTGCGACATCAGCTCAAG
Seq A exon
GTCTTTCTGCAGTTTTTTTTTTTTTTTTTTGTATGCACAGCAGTTATTTGTATTGTCTATCTGGTTTAACAGAGTGTGTTTGTGTATTGTATGTGTTTGTAG
Seq C2 exon
GTCGTGCTATGCATGTCTCCAGTTGGTAATGCTCTGCGCCTGCGTGTCCGGCGTTTCCCGGCTCTGCTGAGCTGCACCACTCTGGACTGGTTCCAGGAATGGCCCCAGGAGGCTCTTCAGTCTGTCAGCTTAAAGTACCTGCAGGAAATCCCAAGTATTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000094282:ENSDART00000138744:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF127802=AAA_8=PU(27.9=97.6)
A:
NA
C2:
PF127802=AAA_8=FE(19.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTGGAAGGTGTCAGGAAAGC
R:
AGCTGACAGACTGAAGAGCCT
Band lengths:
242-344
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]