DreINT0020331 @ danRer10
Intron Retention
Gene
ENSDARG00000087203 | STK39
Description
serine threonine kinase 39 [Source:HGNC Symbol;Acc:HGNC:17717]
Coordinates
chr9:49290695-49293271:-
Coord C1 exon
chr9:49293149-49293271
Coord A exon
chr9:49290728-49293148
Coord C2 exon
chr9:49290695-49290727
Length
2421 bp
Sequences
Splice sites
5' ss Seq
AGGGTGAGC
5' ss Score
7.75
3' ss Seq
TCTTGTTATTGCTTTTGCAGTCA
3' ss Score
7.81
Exon sequences
Seq C1 exon
GTCAGAAGGGTCCCAGGGTCGAGTGGACACCTGCACAAAACTGAAGACGGAGACTGGGAATGGAGCGACGACGAAATGGATGAAAGAAGTGAAGAGGGGAAGGCAGCTGTCAATCATGAAAGG
Seq A exon
GTGAGCACAGCCATTAAGTTGCCAAATAATGATCCTTAAAGAGATTTTACTCACTCTCAGACCATCCAGTATTACTTTATTCTTTAGATAAACGTTAAAGTAGATTGTTAGCTAAAATCGTTGTGTTTGGGGATTCATGAAATGTTAGTCAATGGCTCCTGGCACTTTGAGAGTCAGAAATACACATACAGGAAAGACAGTATTAATAATAAAAGTGGCTCTTGGTGATACACTGAGAATTGATGAGGAGAAATGATCTGTCTGTGCAAGAGAGTTTGACAAGGTTCTGAATTAAAGATGGAATTTTTTTTGTCTCAAATTGATAATATGTAAAAAAAAAAAAACTGTAGCGTAAAAAAATATTAGTCTAAATATTATATTCTATTATTGAGTGATCTTTTTGAGTTGTACATCTTTGAGTCACTCATTTCAATAAATCAGTTTCTTTATATTGATCTGCAGTAAAGATCATGATCAGATTATTAAGTGATGCTACTGAGTCACACTTTTCATTGAGACAATTTCTAAATTTTTATGAGTCATTCGTTTGATTCGCTCTTTTCAATGAGTCAGTTTCTAAATATAAATCTAACTATCATAATCAGATTACTGAATGATTCTTTTGAGTCGCTGTTTTCTGAGAATCAGTTTGTAAATGTTATTGGGCCATTCTTTTGAGTCACTTTTCAGTGATGCAGTTTCTAAATATCAATCAAAAATCATCAGACTGAGTGATTCTTTCGAGTTGCTCTTTTCAACGAATCAGTTTCTAAATGTTACTGAGTGATTCCTTATAGTCGCTCTTTTCAACGAATCAGTTTCTAAATGTTACTGAGTGATTCCTTTGAGTCGCTCTTTTCAGTGAATCAGTTTCTAAATATGAATCTAAATATATTGTAATCAGATTAGTGAGTGATTCTTTTGAGGCGCTCTTTTCAATAAATCAGATTCTAAATTTTAATGAGTCATTCTTTGCCTTGGTCTTTTCAGTGAATCAGTTTTTAAATATGAATCCAAACATCGTAGTCAGAAAATTGATGAGTGATTCTTTTGAGTTGCTCTTTTCATTGAATCAGTTTCTAAATGTTAATGAGTCTTCATTTGGGTCACTTTTCAGTGAATCAGTTCCTAAATATCAATCAAAAACCACCAGACTGAGTGATTCTTTTGAGTTGCTTTTTTCAATGATTCAGTTTTTAAATGTTAATGAGTCATTCTTTGAGTCGCTCTTTTCAGTGAAGCAGTTTATAAATATGAATTCAAACATCGTAGTCAGAAAATTGAGTGATTTTTTAGAGTTGCTCTTTTCAATGAATCAGTTTTTAAATGTTAATAAGTGATTCTTTTGAGTCGTTCTTTTCAATGAATCAGTTTCTAAATGTTAATGAGTCTTCTTTTGGGTCACTTGTCAGTGAAACAGTTCCTAAATATCAATCAAAAACCACCAGACTGAGTGATTATTTTAAGTAACTTTTTTTTCAATGATTCAGTTTCTAAATGTTAATGAGTCATTCTTTTGAGTCGCTCTTTCCAGTGAAGCAGTTTCTAAATCTAAATCTAAATATTGTAATCAGACTGAGTGATTCTTTTGAGTTGCTTTTTTCAATGATTCAGTTTTTAAATGGTAATGAGTCATTCTTTGAGTTGCTCTTTTCAATGAATCAGTTTCTAAATATGATTGTAAACGTTGTAATCAGATTATTGAGTAATTCTTTTGAGTCACTCTTTGCAGTAAATCAGTTATGTATTTATCCACAGTAAATATCAATCAGATTATTGAGTGATTGTTTTGAGTCACTCTTTTCAATGAGTCAGTTTCTAAATGTTAATGAGTCATTCATTTGAGTCACTTTTCAGTGAATCAGTTTCTAAACTGAATCTAATTACTGAATTTGAATGATTCCGTAGCAGATTATTTTCTGACACTAATCACAAAATAATGTGTTTTCAGAAGATGCAAAATACGCCAAACAGTTTTGCTGGTGACATTTCAGACCTCGCTGTACACAAATAAAGCCTCTGTTCTGTGTTTGTCATGTGAGATCTGAACTGATGCACTTCCTCTGATGTAAAGGCGAGAGTTTCACCTCCAGGTCTCTTAATATTTGATGATGAACGCTCTGCCGGAGCCACACAGGTGACACACAGCATTTGATCAAAGCCCAAGGCCTTTTCACTCATGAATGTGGAATATTTAATGCTTAAGCGTCTCCGTCAGGAAGGAACAATCAGAGCTCCCCGAAGCGAAGCGTCCGCAAATCAGCGTCTGTTAATGAAGCTGGAGACGTTTGTTCTGTTGTTTATTGTTTATTATGGAATGCAAATGAGCGAGTGCTGATTGCACTCCTACACAAACACTGCATCTGTCTGTCGTACAGTGAAAAAACATAATTGAATCCTGTCTTGTTATTGCTTTTGCAG
Seq C2 exon
TCACGCAGGGTCAAAGAAAACGAAAACCAGCAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000087203:ENSDART00000125090:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]