HsaINT0160933 @ hg38
Intron Retention
Gene
ENSG00000198648 | STK39
Description
serine/threonine kinase 39 [Source:HGNC Symbol;Acc:HGNC:17717]
Coordinates
chr2:168074982-168075231:-
Coord C1 exon
chr2:168075109-168075231
Coord A exon
chr2:168075012-168075108
Coord C2 exon
chr2:168074982-168075011
Length
97 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAAT
5' ss Score
8.88
3' ss Seq
GATACATAATTGTTTTACAGTCA
3' ss Score
5.14
Exon sequences
Seq C1 exon
GTAAGAAGAGTTCCTGGGTCAAGTGGTCACCTTCATAAAACCGAAGACGGGGACTGGGAGTGGAGTGACGACGAGATGGATGAGAAGAGCGAAGAAGGGAAAGCAGCTTTTTCTCAGGAAAAG
Seq A exon
GTAAATGACATCGTTGACGATGAGCTAATCTGTGTAAATTTTATTTTTGTGATTGTGTGTGTGTATATATATTAATGGATACATAATTGTTTTACAG
Seq C2 exon
TCACGAAGAGTAAAAGAAGAAAATCCAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000198648:ENST00000355999:11
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTAAGAAGAGTTCCTGGGTCAAGTG
R:
CTGGATTTTCTTCTTTTACTCTTCGT
Band lengths:
151-248
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains