GgaINT0048480 @ galGal3
Intron Retention
Gene
ENSGALG00000010930 | STK39
Description
NA
Coordinates
chr7:20603840-20604109:+
Coord C1 exon
chr7:20603840-20603962
Coord A exon
chr7:20603963-20604076
Coord C2 exon
chr7:20604077-20604109
Length
114 bp
Sequences
Splice sites
5' ss Seq
AAGGTAACT
5' ss Score
9.01
3' ss Seq
TCACTGCATTTATTTTCTAGTCA
3' ss Score
7.49
Exon sequences
Seq C1 exon
GTTAGACGAGTGCCAGGTTCCAGTGGTCACCTCCATAAAACAGAAGATGGAGACTGGGAATGGAGTGATGATGAAATGGATGAAAAGAGTGAAGAAGGCAAAGCTGCTGTTTCTCAGGAGAAG
Seq A exon
GTAACTTTTGTTTGTGTCAAGACAGTTACAGTTTGCAAGATGTTCTGTTTTAATTGTTAGTATTTCTGGATCTTTAATGCATAAAACTCATGTTTCACTGCATTTATTTTCTAG
Seq C2 exon
TCACGAAGAGTGAAAGAAGAGGAGAACACAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000010930:ENSGALT00000017779:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTAGACGAGTGCCAGGTTCCA
R:
TCTGTGTTCTCCTCTTCTTTCACT
Band lengths:
154-268
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]