MmuINT0154238 @ mm9
Intron Retention
Gene
ENSMUSG00000027030 | Stk39
Description
serine/threonine kinase 39, STE20/SPS1 homolog (yeast) [Source:MGI Symbol;Acc:MGI:1858416]
Coordinates
chr2:68152421-68152660:-
Coord C1 exon
chr2:68152538-68152660
Coord A exon
chr2:68152451-68152537
Coord C2 exon
chr2:68152421-68152450
Length
87 bp
Sequences
Splice sites
5' ss Seq
AAGGTAACC
5' ss Score
9.24
3' ss Seq
GACATATCCTTGTTTTGCAGTCA
3' ss Score
7.29
Exon sequences
Seq C1 exon
GTAAGGCGAGTTCCTGGGTCGAGCGGTCACCTTCATAAGACTGAAGACGGCGACTGGGAGTGGAGCGATGACGAGATGGATGAGAAGAGCGAGGAGGGGAAGGCAGCCGCCTCCCAAGAGAAG
Seq A exon
GTAACCACCCTCGGCCACCACTGGCTGTCTTGTATCGTGGCTCTGTGGAATTCCATGGATTTTAATGGACATATCCTTGTTTTGCAG
Seq C2 exon
TCACGAAGAGTAAAAGAAGAGAACTCAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000027030-Stk39:NM_016866:11
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTAAGGCGAGTTCCTGGGTCG
R:
CTGAGTTCTCTTCTTTTACTCTTCGT
Band lengths:
151-238
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: