RnoINT0145141 @ rn6
Intron Retention
Gene
ENSRNOG00000024808 | Stk39
Description
serine threonine kinase 39 [Source:RGD Symbol;Acc:621643]
Coordinates
chr3:54463198-54463443:-
Coord C1 exon
chr3:54463321-54463443
Coord A exon
chr3:54463228-54463320
Coord C2 exon
chr3:54463198-54463227
Length
93 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAAC
5' ss Score
8.14
3' ss Seq
GACATCTCCTTGTTTTGCAGTCA
3' ss Score
8.08
Exon sequences
Seq C1 exon
GTCAGGCGAGTTCCTGGGTCAAGCGGTCACCTTCACAAGACTGAAGATGGCGACTGGGAGTGGAGTGATGATGAGATGGATGAGAAGAGTGAGGAGGGGAAAGCGGCTGCCTCTCAAGAGAAG
Seq A exon
GTAAACGCCCGCGGCCACCACTGGCCAGTGTGTGTCTCTGTCGTGGTTCTGTGGCATTTCATGGATTTTAATGGACATCTCCTTGTTTTGCAG
Seq C2 exon
TCACGAAGAGTAAAAGAAGAGAACCCAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000024808:ENSRNOT00000037133:11
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGCGAGTTCCTGGGTCAAG
R:
TGGGTTCTCTTCTTTTACTCTTCGTG
Band lengths:
147-240
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]