GgaINT0048480 @ galGal4
Intron Retention
Gene
ENSGALG00000010930 | STK39
Description
serine threonine kinase 39 [Source:HGNC Symbol;Acc:HGNC:17717]
Coordinates
chr7:18633264-18633533:+
Coord C1 exon
chr7:18633264-18633386
Coord A exon
chr7:18633387-18633500
Coord C2 exon
chr7:18633501-18633533
Length
114 bp
Sequences
Splice sites
5' ss Seq
AAGGTAACT
5' ss Score
9.01
3' ss Seq
TCACTGCATTTATTTTCTAGTCA
3' ss Score
7.49
Exon sequences
Seq C1 exon
GTTAGACGAGTGCCAGGTTCCAGTGGTCACCTCCATAAAACAGAAGATGGAGACTGGGAATGGAGTGATGATGAAATGGATGAAAAGAGTGAAGAAGGCAAAGCTGCTGTTTCTCAGGAGAAG
Seq A exon
GTAACTTTTGTTTGTGTCAAGACAGTTACAGTTTGCAAGATGTTCTGTTTTAATTGTTAGTATTTCTGGATCTTTAATGCATAAAACTCATGTTTCACTGCATTTATTTTCTAG
Seq C2 exon
TCACGAAGAGTGAAAGAAGAGGAGAACACAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000010930:ENSGALT00000017779:11
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.739 A=NA C2=0.892
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTAGACGAGTGCCAGGTTCCA
R:
TCTGTGTTCTCCTCTTCTTTCACT
Band lengths:
154-268
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]