DreINT0029671 @ danRer10
Intron Retention
Gene
ENSDARG00000092143 | ank1a
Description
ankyrin 1, erythrocytic a [Source:ZFIN;Acc:ZDB-GENE-041010-44]
Coordinates
chr5:68136288-68141351:-
Coord C1 exon
chr5:68141268-68141351
Coord A exon
chr5:68136607-68141267
Coord C2 exon
chr5:68136288-68136606
Length
4661 bp
Sequences
Splice sites
5' ss Seq
AAGGTCAGC
5' ss Score
7.09
3' ss Seq
TGTACACGTGGCTGATGTAGATT
3' ss Score
4.26
Exon sequences
Seq C1 exon
GGTGATGAGGCTGAGGATCTTCCAGGAGAGCAAGTGAGCGAGGAGCAATTCACAGACGAGCATGGCAACATCGTCACCAAAAAG
Seq A exon
GTCAGCAATCCCATCCTGCTTTTGATTTTTTGGCCTGAAGCGAAGTCATTCATTTCAAATCCATCTCCATAATCATGAAAATTATTTACATTTTGTGCTGTGTTAAAGGTTTGCTGGGTTTGGGTTTGTTTTTCTGTTTTAAATCCTAATGCACTGCCGAAAACCCTGAAATGCATCCTGTGCTGAAAATCCTTTATAAATAACTTCATTTATCAACTTCTATAAAGCAACATCTTATATATCGCTTTCGAAGAGAACACCATAACACACACTTAAAAAAAAAATGTATTGATAGAATAGCAAATGTTTTTTACATCACTTTAACTGTAACTTATATTTTGAAGTTAATTTGGTTCCAACAGAAAAAAAATATTATTTATGCAAAGTTTAGCTAATATTGTAGTCAGTTTGATTGATGTAAGTTGAAATGACTAGAAAAGTTCATTTCATTTAACTAAAATAATTTTTAGCAAGCAAGATGTCTTTTTTACAGTGTGCCATCAAGTAAATGACAGAAGAGGGAGAAGAAAGAAAGAGAAGTTATAAAAACGGAAGGGAATGATTTTGAGAATATAATAACTAAAAACTTAGTTTTTTTAATTTAAGGTTTACATTGCAAATCTAATTACAGGTGATGTCATTCCGTTGAAGTCAAAATTATTAGCCCCCCTGTTAATATTTCCCCCAATTTTTGTTTAACGGAGAGTAGATTTTTTTTCAACACATTTCTAAACATAATAGTTTTAATAACTCATCTCTAATAAGTGATTTATTTTATTTTTGCCATGATGACAGTGAATAATATTTGACTAGATATTTTAAGACACTTTTATACAGCTTAAAGTGATATTTAAAGGCTTAACTAGGTTAATTAGGTTAACTAATCAGGTTTGGGTAATTAGGCAAGTTATTGTATAATGTTGGTTTGTTCTGTAGACTATCAATAGAAATATAGCTTAAAGGGGCTAATAATTTTGACCTTAAAATGGGTTTTCAAAAATTTAAAAGTGTATTTGTTCTTGCCGAAATAAAACAAATAAGACTTTCTCCAGAAGAAAAAATATTATCAGACACACTGTGAAAATTTCCTTGCACTGTTAAACATCATTTGGGAAATATAAAATAATAATAATAATAATTCAAAGGGGGCTAATAAATCTGACTTCAACTGCATATTACATAAACTAAAAGACAATTTAATGTCAATTGAACTACCTTGATGTGTCGAGTCCTGTGAAGGAGCTCCAGATGGAAACTTTTGTTTTGTGTTTACCTTACGATTAATTTTGTTGCACGTCCCCCTGAATTCCCTGAATGAGCGAGTTTTAGCTACTTGTAGCATTCAGAATAAAACAAAGCACCCGTGAAGAAACTCGAAACAGACAATCATACAAACCTCCTGCCAGCTAGTGTTTTAGAAGTGCGTGCAGAAATGCACGACTACATACAAGGCAGGCGCCATGGGTCATGCCGATCGCTACGCACAAAAGTATAAACCAGCCTTTAGTTAAGTTATGAACTGCAAAAAAATACTCTAGTATACTTTAGTTTTTACTACAGCTAACTGTGGTGTATTGTAGTATGATATACCCTATAGTAGCAGCAGACCAGGGGTGTCCAAACTCGGTCCTGGAGGGCCAATATCCTGCATAATTTATCTCCAACTTCCTTTAACACACCTCCCAGGAAGTTTCTAGTATACCAAGAAAAAGCTTGATTGGCTGGTTCAGGTTTGTTTAATTCAGGTTGGAATTAAAATATGCCTATTTTATGGAAGTAAAATAGGACACCGGCTCTCCAGGACCGAGTTTGGACACCTCTGTTGTAGACAGTAATTGTTTAATATAACTATAGTAGTTGTGTTATCATAGCAATTGTAGAATTACCACAGCAGATTAATTCATGCATGTTGCTAATGCTGGTTTGTCATAACCCAACACTGGGTCAAACATGAACAAACCCAAATTTTAATAAAGCTTTTGAACACAACAGTTTGTCCATAATTGACCCAACATTGGGTTACACCCTGCATCTATTTGAGTGTAATATACAGTAGTTACTAGAAAACGTACCATTATTAAAAGGATAGGTAAGACTAACTTAGGGTGCTTTCACACCTGCCTTATTTAGTTCGATTGAATCGCACTAGAGTTCGTTTCCCCTTTTGGTGCGGTTCGTTTGGGCAGGTGAGAATGCAGCAAAGTACTCGAGTGCGCACCAAAAGCAGACCAAATAAGCGTACCGAGATCTGCTTGAAGAGGTGGTCTCGGTACGCTTTCAAACGAACCCTGCAGCGGTTCGTTTGTGGTGAGAATATGATCCGTACTAAAACAGACCCAACCGCAAAAAGTACTGCGCCTTTTGGACTAATCCAGCTGCCGTAGGCCGATGCGGTGTGCATTATGGGATATGGAGGAAAAATATTTGTTGACAGCGCTTTACCAACAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGGGGAAAACATTACCTGATGGATCGTTGGTAATATTTCCGCAAGATGAGCATGTCGCAGTTTAGCTAAATTAATTCACGCCTCCTTCTGAAGTAACGAGCGATACATTAAACAATGTTTTCCAGCCGCGGCCGCGCTTCATTTTCGTAATGTATAGTTTGTCTAAAGAGGGGATACAATCAGCCAGCACAGTCGTGCCTCCATAGTAAAAGGTTTTGTTTACTTGCGGGAGTTCACTGCCATTTTCCTGCATGTGAATTCTGACCAATCAGTGAGCAGTTTAGGAAATATGTTCAACAACATCTGGCCAATGAGAGATGTGGATTTTGTCAGATGACTGCATTTTGGTTCGGTTCAACTGGTTCGGACCAAAGCCAGCAGCCGACCCAAAGACGACAGAAGATGCAACAATAGCCGTGTTTCCACTATCGCGCCTAAAGCGAGCAAGCCAGGGCGAGCCAAGGCCAGTGGCGTTTCCACTGTCACTTCTGGGGCCTAAAGCGGGGCTTTCTTGGGGCCAGCGGCCAGCCTTTTTTGACCCGCCGAATACCTTGGGCCAAAGAGGGCCAGCCGGGGCTTCGGGGTGGAGTGAAAGGAGAGGCGGGCACAGTTTTCCGATCGCACACGAGTACTTGCGCCAAACAAATAAATAAATTAGGGAAAGAAAACATCTGGAACAAATTATAGGCTGGGGTCTTTTTTGCATATGATCGCCCTTATGTTTCTCTTCTAAATGTAAGGCTGTTGCATAAAATGATCTTTCTTTGCTGCATCTTTGATGTTTCAATAACGCCTAATAATCTTTACACCATATTAAAGATACAGCAGACAGTAAAGGTTTTCAAGAGGTTTTGTCAAGTTTAATAAGTGTGTTTTTGCGCGTTTAGATGCCTGTGTATGTGCGTGAGACCGAGGAAAAGAGTGCTCCATTCACAGCTCTGTTGATGCCGCGAGCGGCTTTTTTCTTTTCTTTTTATTGTTTTAATTTATTTTGGAGATAATACACTATATGAATACAACAGTAAGACATTAAACTTTACAAATTTCATGTCCACTTTTGTAGGCTCAAAACAATAGTGTCATATCTAGATAAAATAGCCCTATATTGAAATAATTTAAAGAATTACAAATATCAGATAGGCCTATAATAGAATTACATTAAATAAATAAACCAATATAAAACAAAAGCTATAGCTATAACAATTAGGTACTATATCAAACTGTTTCAAATTTATATTAAACTTTCATTTTTCAAAAGCCTCTTTGAAAAAAAGATTTTAGATATTTTATAAAAAATTAGATAAATAAATAAACACCGGAGAATGTTTTAAATATTATTTATAAAGTATTTGGATACGATGAAATTAATCAAATCATGCAAACAGAGCATTTTCGGGGTGAGTGAACGCAGAAACTAGGCGACCTTTTTTTCTGTCTTCCAGCTGCGCAGCACTTTTTTGATGGGGAAAACTGCAAGTTCAAAATGTGTTCTGTGTCATCAAACAAGTGTGTGTGTTTTTATATAACGTGGTAAAATTAAAAAGGACATTTTAAATACATAAAGAGCTTTATTAGTGCATAGCTGCTGAGCGCAACGAAATATAGGCTATATTTTATTACGTGCTGCTCTTATGTGCTGAAACACTCAACACTCAATCATTTATTGCGCTTGGTCCTGACCAAATGAAGCGAACTACAGATGTGAAAGCACCCTTAATAAATGGGTCATCGTTTACTCACCCTGGCCTTGTATTAAACCTTTATGAGTTTCTTTATTCTGTTGAACACGAAAGAAGATCATTTGAAGAATGCTGAATACCTGACTTCCATTGCTTTTCCTTCTATGGAAGTCAATGGTTACAGGTTTCCAGTTTTCTTCAAATGATCTTCTTTAGTGTTCAACAGAAGAAAGAAACTCATATGTGTTTGGAAACACTTGGGGGTGAGTAAACAGTGACGTTTTTTGGTGAACTATGCCTTCAACTCAAGATTACAGTATAGAAAATAGGTCAGATAGATGCATTGGGATGTTTCATGTTGACTTTAAATGCAACTTTTAATCACACTATTATTTTTGCATGTTGTTTTTCCCCATCTGTCACCCTGATTATCTGTTTTCATGTCTCCTCCTCGTCTGCTCATCCACCGATTCTCTCATCCATCTGTACACGTGGCTGATGTAG
Seq C2 exon
ATTGTGAGGAAAGTGGTCCGGAGAGGAAAAGGGGAGGAAGGGGGTCAGGAGCTGATCATTGAAGGTCTGCAGCAGGATATCAGTGAGCCTGACTTTGATGGAGAACAGTTCATGAGCTATGCCGTCCTGGGACGTGACAGCAAGGTGGGCTTTTGAGTTAGATGAGGTGGTTTAAAAAGGGAAATGCAAAGATGCTTGTATAGTGAAAGTTTAGTAGATCAGGGAAACTGCAAAACACAAAGCGTTATTGGTGACATTACGATAAGGTTTCATTTGTGAAAAGGACATGGACTAAGAATAAACTAAAGCATTTATTAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000092143:ENSDART00000109053:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.496 A=NA C2=0.092
Domain overlap (PFAM):
C1:
PF042227=DUF416=PD(25.8=82.1)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]