Special

HsaINT0008073 @ hg19

Intron Retention

Gene
Description
ankyrin 1, erythrocytic [Source:HGNC Symbol;Acc:492]
Coordinates
chr8:41510744-41521260:-
Coord C1 exon
chr8:41521177-41521260
Coord A exon
chr8:41513273-41521176
Coord C2 exon
chr8:41510744-41513272
Length
7904 bp
Sequences
Splice sites
5' ss Seq
AAGGTGGGT
5' ss Score
8.23
3' ss Seq
TCTCTCTTTGTGTCTCCCAGGAT
3' ss Score
10.81
Exon sequences
Seq C1 exon
GGGAATGAGTTTCAGAATATTCCAGGGGAGCAGGTGACAGAGGAGCAATTCACGGATGAGCAGGGCAACATTGTCACCAAGAAG
Seq A exon
GTGGGTGCAGAGTGTTCCCCTCTGTGCTGGGGAGAGGCAGGTGGGCTAGAAGCTAAAAGGTGGTAGAAGCCAGTGGCTTCTCCCTGCTGCCCTCACAGCAGGTGAGCACAGCCAGGCTGGCTGCCCCCGTGCTCAGGAGGGATGGAGGGCCCAGGAGCTGGGAGCTTTGGTCATCTGCAGTCCAGTCATGGTGTCCTCACAACCGCTTTGTCTGAGTCAACCTGAATAGCTTCTGCTGCTCTTTTCCAGAAGGGCCAGCCCCCAGGAAACATCCCAGACCTAGTCCCATGATGCCTAACCCTGAAAACAGCTGTTAAACAAGCAGTTTGAGCATCCCTGGCCTACCATGGGCCTCCTCAAATAAAAAGAATGTGGGCCGGGTGTGCTGGCTCACACCTGTGATCCCAGCACTTTGGGAGGCCAAGGCAGGAGGATCGCTTGAGCCCAGACATTTAGACCAGCCTGGGCAATATGGCAAGACTCCATCTCTAAAAAAAATTTTAAAAAATAAATAAATACACACACACACACACACACACACACAGAGAGAGAGAGAGAGACACACACACACACAAAATTAGCCAGGCATGGTGGCGCATGCCTGTAGTCACAGCTACTCAGGAAGCTGAGGCAGAAGGATCACTTAAACCCAGCAGTTCAAGTCTGCATAAGCTATGATTGAGCCACTGCACTCCAGCCTGGGTGACAGAGTGAGACCCCATCACAATAATTAAATAATTAAAAGGAAGTGAAAATGCATTGGATTGGTAGCAGATATTAACTCAGAGACATGACCTTGCCTGTCAAGTGTGGGGCACGGTGCTAGCTATGGGTAAAATAGAGGAGGAGCTGAGGCAGGATCTCGAATGTGCTTCTGCTTAGGCGCAGCTCTCATCACCCTTGAGCAAGGCTCCTTGTGCGTCTGTCTTGCCTCCTGCACTGTGAGCTGCTTGCAGGCAGGGACAGTGTCTCACTGATGTTTCACCTCCCACTCAGAGCACACGGCAGATACAGAGTAAAGGGTTTGAAGATTTGGACAGGTGAATACGGGAATGGGTGGGTGAAAAAGAGATGCCCTCTGCCCTTAGGCTCATGGGAGTAGAATGGGGAAGAGCACAAACTCCCATCCATATCAAAAAGCAAAACAGAAGGCTGTGGGCTCGAGGGGGAGGTCACACCCAGTCACACCTTGGTCATGAAATGACACTGCCAAGGCCCCTTCAGGGCTGTCTAGCAGAGGGTTTTCCATTAAGCAATGGGGCAAAGGCTGTCCCTCTTCTTGGCCTCTCAAGGAGGGGCTCCTAGGACAAAAGCTACCTCCCCCTCGGAGCTCATTCCTGGGAACTGCTGTTCTGAAGCTCTGTCTTGAGGGCTTGACCAGCCCCCCCGCCTTTTTTTTTTTGACACAGAGTGTTGCTCTGTCAACCAGGCTGGAGTGCAGTGATGCAATCTCAGCTCACTGCAACCTCCATCCACCAGGTTCAAGTGATTCTCCTGCCACAGCCTCCTGAGTAGCTGGGATTACAGGCACCTGCCACCACACCGGGCTAATTTTTGTATTTTTAGTAGAGACAGGGTTTCACCATGTTGGCCAGGCTGGTCTCAAACTCCTGACCTCAGATGATCTGCACGTCAGCCTCCCAAAGTGCTGAGATTACAGACATGAGCCCCCGAGCCCGGCCTGACCAGCCCTTTCCTCCTTCCCTTCCTTTCCTAGATCATTCGCAAGGTGGTTCGACAGATAGACTTGTCCAGCGCCGATGCCGCCCAGGAGCACGAGGAGGTGACTGTAGAGGGGCCCCTGGAGGATCCCAGTGAGCTGGAGGTCGATATTGATTACTTTATGAAACACTCCAAGGTACTGAGGCGCCCGCGGCCCTGGGGGACCCAGCGCCATCACTGCTGCCTTGCTCTGCCGGGCCGTCTGCATGACACCTCCCTCCACTCACCTCTTTATGAGCTCTCTCTCCAGTCTCTCTTCTCCCTGGTGGGCAGTGTGTCTGCCACCTCCGTGTGGCCTCCTTTCGATCTTCTGCCTGTGTTCTGCCCGTCTTTGCGATCTGTCCTGCTTTCTGTCTCTGCTGCTGTCTGCAGGTGGAGCTGAGAGGGAGTGGCCTACAGCCGGACCTGATAGAGGGCAGGAAGGGGGCGCAGATAGTGAAGCGGGCCAGCCTGAAAAGGGGGAAACAGTGACCCCGAGCCGCTCTCCTTGGAGTAGCCTCTCGGGAGGTAACGCTGCCCTTCTCATCCCCTCTGCATGGCCTGGTCTTCAGTGGAGTGGCTGCTCCCTGTCTCACCCTATCCCCTCCCAGCCACCCCAGCATGATGTGGGACAAACAACTTGTTGTTGTGTCTCGAGGCAGAGATTCTCACTTCCCAACCCTGCTAACAGTTGGCTCTGAACCCCAGCTTCCTCATCAAGGAAACAGAGTTAATAATATCCACTTATCAGGGACCGCACGGTTTTGTAAGAATGCCTTTTGGGCCGGGCACAGTGGCTCATGTCTGTAATCCCAGCATTTTGTGAGGTCGAGGCAAAAGGATTGCTTTAGGCCAGGAGTTCAAGACCAGCCTGGGCAACAGAGCAAGACCCCATCACAAAAAAAAGAAAAAAAAAAGCCAGAAAGAAAAAAATGCTCTTTGAAAAGTAAAAGCACTCTGTAAATCTAAGTGGTAATATTATCTTGGAAACCAAGCAATGGGGATCTAGAAAGCAGTGGACAGGGCATTGAAGAGGACAGGAGAGTTGGTCTGGGCTGTGATGCTTCAACATAAGAGCTCCAAGACTGAGGACTGGACTGTCTCTTGAACCTGGAGCCCAGCTACAGTTCTCACCAGGCCAAGGCTTAGCTTCTCTTTGGTGTTTTGTGAAACACGTTGCTCCCTTGCTTTCTAGGAAAGGGCTGAGCCGACAGGCCTAAGGGGTGGACGACGTGCTTTCTGCAAGTCAGGAGACCGTCAGGGTTGGGGCCGGGGCCTGGGCTGTGGTGCATGTGTGTGAGCATGGGGCAGTGTGGCCACAGAGCAGGGGCATGCCGTGCCGTGCCGTGCCATGAGGAAGGGACATGAAGACGCTGTGCGACCATCTCCAGCAGGTGTGTGTGGTGCTGGGGGCTTCAGCGGCCGGCTCTGATCTCCATCCTCCCTGGGGCATCCTGTACTGAGCTGCCCCGAGGCCCTTCATGCTGCCCAGCTCGGGGCAGCTCAGTACAGGATACTCGGGGTGGGAGTCAGCAGGAGGTGAGGGGGCATGGTGGCCCCAGTGCAGCACTAACCAGGCCGTTACCATTCACACCCCAGGGCCTGACTCTGGGACCGAGCAGCAAGGAGGCTCTAGCTTTCTGCATTCGGCAAAAATCAGGGCCCGCTGCCTCCTGAGCCACCAAAAGTGCTGACTCTGGGCTTCCCAATATATCTCAGCACTTGGGCAAAAAAGAGGACTGGCAGATCCAGTTATAGGATAAAATTAGACCTGACACCTCAGCAGCTTAAGGAGGTCACCGTGTTAACCCCTGCACTGCCAGGGGTCCCACTAGGCTGCTGGTTTAGAAGACTCTGAGTAGCTGCTGTTGGGTCCTGGAAAGAACCCAAAGATGCAAATAATGTTTAAAAGCAGCAAAGGGAAAGGAAAAGTACACTTTTCTGACTTATTTTTCTTATGGTAGCAGTGGCGGCTGTGGCTTTAAATTTCTCTTTGGCTCAGGCTCTATGGATGCTCCTGAGTGGGAGAGAGGCAGCCCGAAAGCCAGGCTAGGGGGAAGGAGGGAGCCTTGAATTTCATTTTAATTTGCCGTAAGTGATCTGCAATGTGGCTGAAGCCCCCCAACCTCAGGTGATTAAGGACCGGACCACACTAGCATGGGTGTCAGAAACACGGAGCAGCCTGGCTCTGGGACAGCACTTGGCCCTCTGTCAGTGACAGGCACAGGGACAAGTGTGAGGGTGGCAGGGGGGTGGGGCGGTGGGGCGAGAGCAGTGGTGAGGGAGAGGCGGAGAAAAGCTCCTGCCAAAGTCCCAGAGGGTTAGGGGACAGCATTAAATGCCCTACCCTCCCAACCAGGGCAAAGGCTACAGAGAAGACGGTTGAGGGCCCAAAGGCTTCCTAATTTACTATCCGCATCCCCGACAAGCATGTACAGTCGATCCTCATCATTCACGGATTCTGCATTTGCGAATTCGTCCACTCGCTAACATTTATCTGTAGCCCCAAAGCTGGCACTCACCGTGCTTTGGCTCATTCATGGACACACACACAAGGGCAGAAAGTTTGAGTCGCCCAACCCGTGCAATCCCAGCTGAGGATGAACAATGCCACACTCTGCCTCTGTGCCTCATACTATAAATAAGTGTCCTCCTTGCAGCTTGTGTAGTGCCACATTTTTCACATTTTTGGTTTCATTGTTTAGAATGGCCCCTGAGGGCAGTGCTGAAGTGCTGTCTGGTGCGAAGTGCAAGAAGGCTGGGATGTTCCTTAAGGAGGGAATGGACATCAGATAAGCTCTGCTCAGGGATGAGTTAGAGTGCTTGTGGTGGTGAAGTCAGTGTTAATGAGTCAACCCTATATATTACATAAGGCGTCTTGAAACAGAAACGCATTTAACACAAAGTTATGTATTCATCAGTTGACCAAAATATTGTGGCCAGAGGCTCATGGGAGCCTAACCTTGTATTTCCCTTAGGAGCAGTGGTTCAGTATTTGCTAATTCCGTGTTCACAGCGACTATTTATTTATTTATTTATTTATTTATTTATTTATTTATATTTTGAGAGGGAGTCTCGCTCTGTCGCCCAGGCTGGAGTGCAGTGGCACTATCTCGGCTCACTGCAACCTCCATCTCCCGGGTTCAAGTGATCTTCCTGCCTCAGCCTCCTGAGTAGCTGGGATTACAGGCATGTGCCACCACCCTTGGCTAATTTTTGTATTTTTAGTAGAGACGGGGTTTCACCATGTTGGTCAGGCTCGTCTCGAGCTCCTCACCTCAAGCAACCCGCCCTCCTCAGCCTCCCAAAGTGCTGGGATTACAGGCATGAGCCACTGTGCACAGCCTCAAACAGCGACTAATTTATAGAACAGAGCTATGGCAAATGGCTGTATTTGTTTCAGAGAGTGAAAGCTGGAGCTTGTGAGTCTAGAATCAAGGCCTCCTCCTGCTTCCAGGTTGTATGGCCTTAAGTCATTTAACCGCCCTAAGCTTCAGTCTCCTCAAGGGAGGATGAAAATGTCCCTTTCGAATGTGCTACACTTCAAGAAAAAGGTTTAGAAATAATAATGGTAACTGTGAGCACTGATGTGAAGAGAGTAAATAAGAACATATATGCTCTGGGACTCAAACAATTGCAGGTCTTGTTTGTAGTGTGACTCGGAGCAAGTCAAATGACTTCCCTAAGCCTCAGGTTCCTTAGCCATAAACTAGCAATAATGCCAGCATTTCCCTTGTAGGATGGTTATGATGGTTGCTGAGTTTATGTTTGTGAAAGGGCTGTCTAGGGCCGGGCATAGTGACTCATGCCTGTAATCCCAGCACTTTGGGAGGCTGAGGCAGGAGGATAATTTGAGATGAGCCTGGGCAATGTGGTAGGACCCTGTCTCTACAAAAAAAGTTTAAAAATTAGCTGGACATGGTGGCATACACCTGTAGTTCCAGTTTCTTGGGAAACTGAGGTGGGAGGATCGCTTGAGCCCAGGAGTTCAAGGCTGCAGTGAGCTATGATTATACCACTGCACGCTAGCCTGGGCAACAGGGCAAGACTCTGTCTCTAAATGAAATAAAAATAAAGAATGAAAGAGACTCTTTTCTAAGCTTTTGAAAGGTGAGGGGACCCAGGAGAAGAGGCCAGAACAATGCAGGAGTCCTGGGCAGAGTGAGGTGGCCTAGGTCCTCATCTCACCCCTGCTCTTGCCACTGTGCCTCTAGAGTCTCAGTTTACCAAGGGATGAAATGGGCAGTCATGCCAGCATGATCTCTGAGGTCTGAACTTTCTCTTCTGCTCAGTGCCTGGGCGGTAAAGTAGATGGGAGATCCTAGCCTGTCTTTCCCAGGCTGCATATTCCATGATGGTCTCTTATTTGAGGAGCACTTCTTGGGGCAGGCACCGTGGGGAGCACCAGGAGGCTGTTCTTGCCCTCAGTGTTTCTAATCTAGTCAGGGAAATATGCAGACATCAAAAAGCACAGATGGACAGAGACGGTAACATTTCTAGAGAGCCAAGTAATTGTTTGCATTCATACAATGCTAAGCACCTATGTGTCTTAGCTTTTTTAAACATCACACCTCTCTAATGGGTAGGCCCTATTACTGCCCTCATTTTACAGCAGAGAAAACTGACTCACAGAGCAGGTAAGGCACTTGACCGAGGTCAGGCAGCATGGGACTTGAACCCGGGTGGTCTGGCTCCAGAGTTCATGCTCTTACCCACTCGACTCTGCCATCTCCTGAACAGAAAAGGCAGCTTTTTTCTTTTTTGTATTTTGTATTTTTACAAAATACAAAAGGGAGAGCTTCCAGAGTGGAGAGGGGCCTGCTCCAGGAAGGATCAGGAAGGTTTTGTGGGGTGGAGGTGTTGAGGGCGGCAGGCAGAACCTCTGCAGAAAAGAGAATGGAAGGCAGCCTTGACAGAAGCGTGACCGAAGGCAGAGAACAGGAGGGTAGAGCGTGTTCAGAGGCTTAGAGGAGACAGTCAGACTTGGCCGATGTGATGGCCCAGCAGTGATGAAAGCATCTTCCCTCTACGGTGGCAGCACTGTCCACCCACTGCAGCAGCAGTTCCTGGCTTTACAGTTCTACAGCAGCCCCTGGCAAGGAACCTGGCACCACCCTCCCATCCCTGGGGAACCACCCAAGAGCTGAGTTCTCCCTACTCCCTTCCAACACTCCTCCCCAACCCCTTCACCTGGAGGACCCAAAACAGCTCTATGTCTGGGGATGGCTCCACCTCCGAATGAGCTCCTGCCTCCCTGTGTCACTTCCCACCCTGCCCAAGAGATTGTCACCTCCTCCTTATTGAAGCATCCTCCTTTCCCCAGTGGTCCCAGGGCCCCTGCAGATAGAACATGAGTGGCTGGTCTTGAAAACATGGAGTTTTCACCCCAGGTTGGAGGCTGGAGGCCCCATGGGGGCAGGAGAGGTTTCTCACTGCGAATCCCAGGCTGAAGAATGTGGGCTTAGTTCCTCCAGCAAAGCTGCTCTTTTCCAGCCTAAGACTCAATACAGGAGGAGGAGAGGAGGATGCATCTGCTTTTCAGAGATCTCTGTCCATCTGAGGGGCATGGGGAGAGCAGCCAGAGGCAGCGGTCAGGAAGTGCTGTGGGCCAGAGCTGAAGGGGAGCTGTCACCCTTGAGGCATGAGCTCCCAAGGCCAGGGAGCACATCCGCTCCATCCCTGGGTTCCCAAGGCTGGCGCATGGCGGACATCAGTGCATGTTGGCAGAGCTGAACTGAGAAAGTGAAGGCCTCACCTAGCCTCACCTAGCCCCTTCTTGGCACAAGCCCTGGCTCAAGAAAAATGGCTCTTCCTAAGTACAAGGATCTGCTGGGGGATGTCTCCCCAGGTGACCACGTAGGCACGGGGGCCTCTGCCCCTCTCCAAGGGCACAGAGCACAGTGCTCTCCTTGGCCCATACAGAGAGGCATCCTGGAACACTTGCACACTCAGAAGGAATTCATGAGGCCTGGGTGGCGGCTCTGAGGAACAGCCTCTGCATAGGGAGCAAGAGAAGGAGGGCGGCATCTCAGGAAGTCGGGCTGCAAGTGCAGCACCCTCAGCACATCGCCCTGCCTGGGGAGACTGCTTTTCCTGAGTCAGATTCGGCCTGAGCTGCCAGCACAAAACTCTGTGTGTGGGGTTTTTGCTGGACGTTGCACTTTTGCATTCTAAGTGACTCCTTCTCTCTTTGTGTCTCCCAG
Seq C2 exon
GATCACACCTCGACACCCAACCCCTGAACCCCACACACTCTGCCATGCACACAGGAGGAGAGCTGGACCTGAGGGCCACCGCAGCGGTGCACACATTCCTCTGGGCTGACGGCATGACCTCTGTAAGGGACTCCTGCTAGTCCCCTCTTGGCATGAATGACTGACTGTAGACGCATGACCTCCAGGCTTCAATCCTGCCTCTTGCAATGACAGCTGATCTGTCGGAACCAGGACACAAAAGCAGCAAGAAGCGGGGAGAGAGAGGGATAGAAAACAAGCGCAGGAGAGCCTGCGAACGCAAAAGTGAATGAGGGCTTTTTGTGGCTGGGGATGGGTTTTGGTTTTGGGGTTTTTTTTTTAAATTGTTTTGACTTCGTACAGGGTACTTTTTCCCAACCTCATCTGTCAGAAATCCATGTGGGCTTCCTGGAAAGAAAAAAAAAAAAAAGAAAACTAGGCATGAAATCAGTTTAACACCTTAATCTTAAGCCATGTCCTCATCTGCCCACCCTCCCCAACCCACATACCTCCATTCCACTTGTGACACCCCCTCGACTCCCTGGTGACGCTCCTCCCAGATCGCTCTACATGACATTCAGGACACACACACACACACACACACACCACTCGCCTCCACTGAATCTACACACAGATTTTACTGTGACTTCTGAAGCTGTATAGACTCTGCTGTGGATAAATTGGAATTTTTTATGTTGTCTCTCTCTCTGCCAATTTCAATACGAATCATCTTCCAATGGAAAATCATTACCTTGAAGAGTGCATTCGGGGTTCCTTGTGTTAGGGACTTAAGAATCTGAGGCGAGGACCCCCAGGCTTACCTGTAGGACTCAAAGGGAGCCAGGACCCCATCTGAAAGGGTCTCCTCTCTCAGTTGGGGGACAGGCCGGTGGCTGACCCAGGATTGCACCAGCATGTCCATAGAGAAGAGGTTTTCTATGTCTTCAAGCACTATATCATAGTCCGTGTTCAAAGTGTAAACTGTACAGTAATCAGCCTTGTGTATATGAAAAACAATAAATACTATGCAAACCAATAGAAACATTTAGCAGTACGTACAGAGCCTGACAGCGCAGCTCCTGAGGACTTCTGCGGCTGCAGGAGAAGGAGCTGTGGCCTGTCTTTCAGTGAAAGAGGAAGGAAAGGAGTAGGGCTAGTGAATGTATCTGCCAGGTCTTAGAAGTCAGGACCACCCAGGGTCTCCCAGAGTGAACTTGGTGCTCTAAGTCCAGGCAGCCTGCAGGCTGGGGACCCTGGGTGCAGGTGCCAGGCTCGAGGCTGTTCCCTGTCCTGCCTCAGTGCCTCCCCTCTGCCCAGCCCCTGTGGCCTCTTGGAGAGGCGAGCCAGGGGGCTCCCCGGACCGCATGGCCGGTGAGAGTAGAGTCGGAGGCGGAGAGCCTGGACGCCCAGAGGCCGGGGCCAGGCTCTGGGTCAAGGCAGGAAGGAGACAGACAGCTGGCAGTTCCTCGCCTCGGTGCCATCAGGGAGGAGCCTTAAGTTCCACTAGAGCCTCCGGCCCAGGGAGGCCAGAATCAGCACAATCCCGGCCCCGCCCTCGCGGCGGGCGCCCCCAGGGCCAGGAGAGAGAGACAGGGCTGGCTCCTCTCGCCCCTGGAGCCGCGGTGTGGACGGCCCGGCCCCGTCCGCCCCGCCGCTCTGCGGGAGTGTCCTCGGGACACACTTAAACCTTCCAAGTAGCACAGAAGCCCCCTCCACGTCAGAGGCCCCCTGGCCGCGGGGCCTGTGAGCGGAGAGGGGCCCTGCTTCCCACACAAATCCGCCCCGGTGCACCCCCGGCCAGGCAGGCCCCGGGGCGGCCTAGGCGCCTTGTCGGCCGGGGGTGGGGCTGCTTTTGCTTCCTTTAGAGGGGCGGGCAGGGAGAGGAAGCTCTAGCTCCGGGCCTGAGTTTCCCCGAGGCTGCGTCGGAGGAGCTGCAGGGCGAGCCCGGACGGCTGCCGTCTCCGCCAGAGGCCACCCCGGCCCGGCCTCCAGGGCGCAGAGGCGCCCCCCTCCATCCTCCCCCATCCCGGGGGCCACGGCAGGGGGGCCGCACAGCGCGGCTGGGACCGATTCGGTGACGGCCCAAGGAAGCTGGGCTCAGGGCTCGCCTCTCCCGCCTCGATCCTGCACCTTCCTCTCCCAGGTCGCTGCTGCAGCCAACCCAGTAGCCCCCTTAGCGCCCCCGCGGACCCCGCAGCTCCAGACTCCGCTTTGGCACCTCTGCTCCGGCTGGCATGGCTGCACGCTCCGGCTGCTAGTAGGAGCCGTTAGGGGAGGAGTTTGGGGTCTCCACACGATGCCTAGAGAATGCTGCAGTCTGCACATTAGACGCTTTTTAGAAGTTTTGAAATTACCTTGATTTTTTTAATTGTTATGAAAATGGATCTTTTCTTGACTCTCCCACATGCTCTGTTATGGGAGAGAATCCCCTACCCTACTCTGATGTATAGACCATTCTCCCTTCACCAGCCGAACCAATGTCAAAATTAATAAAGAAATGGACTAATGGCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000029534-ANK1:NM_020480:2
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact

No protein impact description available

No structure available
Features
Disorder rate (Iupred):
  C1=0.653 A=NA C2=1.000
Domain overlap (PFAM):

C1:
NO
A:
NA
C2:
NO


Main Inclusion Isoform:
NA


Main Skipping Isoform:


Other Skipping Isoforms:
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event


GENOMIC CONTEXT[edit]

INCLUSION PATTERN[edit]