GgaINT0136038 @ galGal4
Intron Retention
Gene
ENSGALG00000003594 | chAnk1
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1NJR5]
Coordinates
chr22:2614734-2615354:-
Coord C1 exon
chr22:2615184-2615354
Coord A exon
chr22:2614896-2615183
Coord C2 exon
chr22:2614734-2614895
Length
288 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGT
5' ss Score
10.47
3' ss Seq
GGCTGCGTGGGTCTCCACAGGTC
3' ss Score
8.64
Exon sequences
Seq C1 exon
GCTGGGGCTGTGCGGGAGCCGGAGCCTTGGGCTGCGTGCTGGAAGGCTCTGCTGCCCCCTGAAATGCTTTTCCTCCTGTCCCTCCAGGGCAACGAAGTCCTCCATCTCCCTGGGGAGCATGTGACTGAGGAGCAGTTCACAGATGAACAAGGCAATATAATCACCAAGAAG
Seq A exon
GTGAGTGACTGGGGCCGAGTGTTTGTAGGGTGCTCTCCGCAGTCTTCCTCCTCTCTCTTTCCATGTGGTCCCTCTCTACAGCCCAGGGCCCTGCACAGGGTGCTTGCATTCTGCTTTCTCCAATTACTGTCATGGCTCTTCTCCAGCCAGATTCTGCCAGGGGGTGGTGTGTGCGGGGCTGAGGGCCAGACCAGCAAGAAGGAAGGCATGGTGTCGGGACTGGCCATGTCCCCCTGTGTGGACTGGTGCCAAGGCTGGCAGTGATGAAGGCTGCGTGGGTCTCCACAG
Seq C2 exon
GTCATCCGGAAAGTGGTGCATCAGTTGGACCTCGACACGGATGACAGGAAGGAGCATGAGGACTTGATTCTGGAGGGCTCCCTGCAGGAGCCCCAAGACCTGGAGGCAGAGGCTGATCACTTCATGTACTCCATCCTACAGCGGGACGGTCTGGGGGCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003594:ENSGALT00000005683:40
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.193 A=NA C2=0.241
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGGGCTGCGTGCTGGAA
R:
GTCCCGCTGTAGGATGGAGTA
Band lengths:
292-580
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]