RnoINT0017373 @ rn6
Intron Retention
Gene
ENSRNOG00000018241 | Ank1
Description
ankyrin 1 [Source:RGD Symbol;Acc:1309620]
Coordinates
chr16:73681809-73682880:-
Coord C1 exon
chr16:73682797-73682880
Coord A exon
chr16:73681875-73682796
Coord C2 exon
chr16:73681809-73681874
Length
922 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGG
5' ss Score
10.51
3' ss Seq
CTCTCTCTCTCTTTTTCCAGATC
3' ss Score
13.75
Exon sequences
Seq C1 exon
GGGGATGAGCTTCAGAATATTCCAGGAGAGCAGGTGACAGAGGAACAATTCACAGACGAACAGGGCAACATTGTCACCAAGAAG
Seq A exon
GTAAGGGCAGAGCCTCTGAGTTGAGGAGACGCTGAGGTGAGACCAAAAGCAGAAAGGCAGAGGAGCTCAGCTTAGACCGGCTTCTCACTGCTGCCCTAACAGGGTAGGCGGGCTGTGGCCCACCACCTCAGGGATTCGGGGTAACTCAGGAGAAACGAGACCTCTGGGTCCCTTGCAATCGGAACACTGAGGGCCTTATAACCTCAAAGCCTACCTCAGCATGAATCAGAGGGATCAGCTTCCATGAAACACACAGCCCTAACCTGTGAAAGCTGGCCCTGAAATGTGCTGTGAGAGAATGGGGAACTCTCCTGTGGAGCTCCCGTAACAGACTGGCTGCAGGAACTTGTTAAAACGGCAGCATACCTCAGCGTGATAAGCTTGCGTAGCCTGGCAGGCACTGCCCCGTAAAGCGAAGGGAAGGAGCAGGATATAGCCCGTGTGTGTTTCACTAGGGAGCTGTTCACATAGGGAGTGAAGGCCCCTGTCTGTCCCCGCCCCTTCCTAAGGGCCTAAGCCATGGTTCATGTTCATCTCCCATTCTGGGTAAATGAACACAGAGCAGAGGAGTGGCACAGACGCATCTAGATTAAAAGGGTCACCTCTGTCCTCGGGCACTGGAGAGGCATGATAGTCAACATGAGCCTCTATCCATTCCGGGGTGCAGAATGGGATGTGGGAGGCTGAGGCAGCACTGCGCATGGCCAAGCCAATGGTTGCCGATGCCTGCCAGCAGCAGTGCTCCCCAGTTCAAGCTCCACTGTCATTCCCATGAACGGCAGCAGAGAAAGGCTTCTTCTCGCCTCCAAGGGACAGGAGGACATTGCCCCTCCTCCTGAGGCCATTGCTGGAGACTTGTTCCTCTCAGACTTTGCCCTGACAGTTTGACCAGCCCTCCTTCTCTCTCTCTCTCTTTTTCCAG
Seq C2 exon
ATCATTCGAAAAGTCGTCCGACAGGTGGACTCCTCTGGTGCCATCGACACCCAGCAGCACGAGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000018241:ENSRNOT00000064070:38
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.738 A=NA C2=0.561
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]