GgaINT0136038 @ galGal3
Intron Retention
Gene
ENSGALG00000003594 | Q90715_CHICK
Description
NA
Coordinates
chr22:2665072-2665578:-
Coord C1 exon
chr22:2665453-2665578
Coord A exon
chr22:2665165-2665452
Coord C2 exon
chr22:2665072-2665164
Length
288 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGT
5' ss Score
10.47
3' ss Seq
GGCTGCGTGGGTCTCCACAGGTC
3' ss Score
8.64
Exon sequences
Seq C1 exon
GCTCTGCTGCCCCCTGAAATGCTTTTCCTCCTGTCCCTCCAGGGCAACGAAGTCCTCCATCTCCCTGGGGAGCATGTGACTGAGGAGCAGTTCACAGATGAACAAGGCAATATAATCACCAAGAAG
Seq A exon
GTGAGTGACTGGGGCCGAGTGTTTGTAGGGTGCTCTCCGCAGTCTTCCTCCTCTCTCTTTCCATGTGGTCCCTCTCTACAGCCCAGGGCCCTGCACAGGGTGCTTGCATTCTGCTTTCTCCAATTACTGTCATGGCTCTTCTCCAGCCAGATTCTGCCAGGGGGTGGTGTGTGCGGGGCTGAGGGCCAGACCAGCAAGAAGGAAGGCATGGTGTCGGGACTGGCCGTGTCCCCCTGTGTGGACTGGTGCCAAGGCTGGCAGTGATGAAGGCTGCGTGGGTCTCCACAG
Seq C2 exon
GTCATCCGGAAAGTGGTGCATCAGTTGGACCTCGACACGGATGACAGGAAGGAGCATGAGGACTTGATTCTGGAGGGCTCCCTGCAGGAGCCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003594:ENSGALT00000005683:40
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.333 A=NA C2=0.677
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCTGCTGCCCCCTGAAATG
R:
AGCCCTCCAGAATCAAGTCCT
Band lengths:
204-492
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]