BtaINT0017894 @ bosTau6
Intron Retention
Gene
ENSBTAG00000027629 | ANK1
Description
ANK1 protein; Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:A2VE25]
Coordinates
chr27:36263073-36264137:-
Coord C1 exon
chr27:36264054-36264137
Coord A exon
chr27:36263139-36264053
Coord C2 exon
chr27:36263073-36263138
Length
915 bp
Sequences
Splice sites
5' ss Seq
AAGGTGGGT
5' ss Score
8.23
3' ss Seq
CCTCCCTCTCACTTTTCCAGATC
3' ss Score
12.43
Exon sequences
Seq C1 exon
GGGAATGAGCTTCAGAATATTCCAGGGGAGCAGGTGACAGAGGAGCATTTCACAGATGAGCAGGGCAACGTCATCACCAAGAAG
Seq A exon
GTGGGTGCAGAGTCCCCCCTGAGCTGGGCAGAGGGCTTTGAGCTCACCCTCAGCTTCTTACTACCCTAACAGCAGGGTAAGCCCGGCTCAGATGGGACGGTTCGGGTACCTGCTACAGTTCCAGACGTGGCGGTCCTTACTTTGCCTGATACAGCCTGAGCTCAGCTGGGGCGGCTGTGTTCCAGAAGGACGGGGCCCTGTGGATACAGCCCAAACCTAGTCCTGTGACGCCTGGCCCTGAAAACAGCTGTGTCACAGCAGTGTGGGGGTCCCCATGGGGCTTCCTGAGATAAAAAGGATGTGAGAACGCATGGGGTTGGCCGCAAGTTTACACCAGGAGCCGTGATTCTGCCGGACAAGGGCTGTGCTGGCTGAGGCTGAGCGGTGTGGCTCCAGTGCACACGCTCGCTTGGAGCAGGGCCCGGTCTTTCCTTTCACATGAGAAGCTTCACGCTTGTGCATGTTCTCACCTTCCCACTCCTTGCACACGGTCAGTGCAGAGCAGACAGTCATTGGCATGTTCAGATGTGTGACTAGGGAACAGACAGTCGAAGGGACAGACACGCCCTCCCCGTCAGGGGCTCACCGTTGTGCAGGGAAGACAGTGTAAACGTCCGTCACACACCTGCAGGCAGAATGGACCCCATGGGCTAGAGATGGAAGTCATAGCGTCAGACCCACTTGTCCCTGAGCCCCGCTGAGACCCCCACAAATTCCAGGCCTTCTGAGACTGCCCAGTGCGGGCTCCCCATCCAACCATGGGGATCAGAGGCCGCCCCTGACCTTGACCACAGGGAAGGGCACCTGGGGCCATAGCCCGCACCCACTGCACCACCCTCTGGGACCTGCCCCCTTTCAAGCTCTTCCTCGACGGCTTCTCCAAGCCCCCTCCTACCCTCCCTCTCACTTTTCCAG
Seq C2 exon
ATCGTTCGCAAAGTCGTTCGCCAGATAGACCCGTCCGGAGCCGATGACACCCAGGAGCTTGAGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000027629:ENSBTAT00000004244:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.286 A=NA C2=0.409
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]