HsaINT1003641 @ hg38
Intron Retention
Gene
ENSG00000029534 | ANK1
Description
ankyrin 1 [Source:HGNC Symbol;Acc:HGNC:492]
Coordinates
chr8:41661801-41663742:-
Coord C1 exon
chr8:41663659-41663742
Coord A exon
chr8:41661942-41663658
Coord C2 exon
chr8:41661801-41661941
Length
1717 bp
Sequences
Splice sites
5' ss Seq
AAGGTGGGT
5' ss Score
8.23
3' ss Seq
TCCTTCCCTTCCTTTCCTAGATC
3' ss Score
12.33
Exon sequences
Seq C1 exon
GGGAATGAGTTTCAGAATATTCCAGGGGAGCAGGTGACAGAGGAGCAATTCACGGATGAGCAGGGCAACATTGTCACCAAGAAG
Seq A exon
GTGGGTGCAGAGTGTTCCCCTCTGTGCTGGGGAGAGGCAGGTGGGCTAGAAGCTAAAAGGTGGTAGAAGCCAGTGGCTTCTCCCTGCTGCCCTCACAGCAGGTGAGCACAGCCAGGCTGGCTGCCCCCGTGCTCAGGAGGGATGGAGGGCCCAGGAGCTGGGAGCTTTGGTCATCTGCAGTCCAGTCATGGTGTCCTCACAACCGCTTTGTCTGAGTCAACCTGAATAGCTTCTGCTGCTCTTTTCCAGAAGGGCCAGCCCCCAGGAAACATCCCAGACCTAGTCCCATGATGCCTAACCCTGAAAACAGCTGTTAAACAAGCAGTTTGAGCATCCCTGGCCTACCATGGGCCTCCTCAAATAAAAAGAATGTGGGCCGGGTGTGCTGGCTCACACCTGTGATCCCAGCACTTTGGGAGGCCAAGGCAGGAGGATCGCTTGAGCCCAGACATTTAGACCAGCCTGGGCAATATGGCAAGACTCCATCTCTAAAAAAAATTTTAAAAAATAAATAAATACACACACACACACACACACACACACAGAGAGAGAGAGAGAGACACACACACACACAAAATTAGCCAGGCATGGTGGCGCATGCCTGTAGTCACAGCTACTCAGGAAGCTGAGGCAGAAGGATCACTTAAACCCAGCAGTTCAAGTCTGCATAAGCTATGATTGAGCCACTGCACTCCAGCCTGGGTGACAGAGTGAGACCCCATCACAATAATTAAATAATTAAAAGGAAGTGAAAATGCATTGGATTGGTAGCAGATATTAACTCAGAGACATGACCTTGCCTGTCAAGTGTGGGGCACGGTGCTAGCTATGGGTAAAATAGAGGAGGAGCTGAGGCAGGATCTCGAATGTGCTTCTGCTTAGGCGCAGCTCTCATCACCCTTGAGCAAGGCTCCTTGTGCGTCTGTCTTGCCTCCTGCACTGTGAGCTGCTTGCAGGCAGGGACAGTGTCTCACTGATGTTTCACCTCCCACTCAGAGCACACGGCAGATACAGAGTAAAGGGTTTGAAGATTTGGACAGGTGAATACGGGAATGGGTGGGTGAAAAAGAGATGCCCTCTGCCCTTAGGCTCATGGGAGTAGAATGGGGAAGAGCACAAACTCCCATCCATATCAAAAAGCAAAACAGAAGGCTGTGGGCTCGAGGGGGAGGTCACACCCAGTCACACCTTGGTCATGAAATGACACTGCCAAGGCCCCTTCAGGGCTGTCTAGCAGAGGGTTTTCCATTAAGCAATGGGGCAAAGGCTGTCCCTCTTCTTGGCCTCTCAAGGAGGGGCTCCTAGGACAAAAGCTACCTCCCCCTCGGAGCTCATTCCTGGGAACTGCTGTTCTGAAGCTCTGTCTTGAGGGCTTGACCAGCCCCCCCGCCTTTTTTTTTTTGACACAGAGTGTTGCTCTGTCAACCAGGCTGGAGTGCAGTGATGCAATCTCAGCTCACTGCAACCTCCATCCACCAGGTTCAAGTGATTCTCCTGCCACAGCCTCCTGAGTAGCTGGGATTACAGGCACCTGCCACCACACCGGGCTAATTTTTGTATTTTTAGTAGAGACAGGGTTTCACCATGTTGGCCAGGCTGGTCTCAAACTCCTGACCTCAGATGATCTGCACGTCAGCCTCCCAAAGTGCTGAGATTACAGACATGAGCCCCCGAGCCCGGCCTGACCAGCCCTTTCCTCCTTCCCTTCCTTTCCTAG
Seq C2 exon
ATCATTCGCAAGGTGGTTCGACAGATAGACTTGTCCAGCGCCGATGCCGCCCAGGAGCACGAGGAGGTGACTGTAGAGGGGCCCCTGGAGGATCCCAGTGAGCTGGAGGTCGATATTGATTACTTTATGAAACACTCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000029534:ENST00000347528:40
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.605 A=NA C2=0.610
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAATGAGTTTCAGAATATTCCAGGG
R:
GTAATCAATATCGACCTCCAGCTCA
Band lengths:
206-1923
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains