DreINT0029746 @ danRer10
Intron Retention
Gene
ENSDARG00000061736 | ank3a
Description
ankyrin 3a [Source:ZFIN;Acc:ZDB-GENE-060621-1]
Coordinates
chr17:20707668-20708067:-
Coord C1 exon
chr17:20707945-20708067
Coord A exon
chr17:20707695-20707944
Coord C2 exon
chr17:20707668-20707694
Length
250 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGA
5' ss Score
10.57
3' ss Seq
GTATTGCTGGGAAATTTTAGGAA
3' ss Score
2.79
Exon sequences
Seq C1 exon
GTCAGAGATATAGGCCAAGAGCCATGTGGGAGAATATCTTTCCTTAGAGAGCCTAAAACCGCAAAAGGCCTGCCACAGAGTGCAATCTGCAACCTTAACTTCACACTGCCAACACACAGAAAG
Seq A exon
GTAAGAACAAATATGAAGATGATTCTGTGATGCTTCCTCTAGTATTGTCTGAAATCTATTAAACATGTCTTTTGTGAGTTTTTTTTGTGTTGCTTCTTTGTTGCTTTGCCTTTTTGTCTTTTAATCTCTGTGCGTCTGCTTTTCTTCCACTTCCTTACTGTCCTTTTTCTCTTGTTCCAACCCCATCTTCACTTACCCACCATCCTCGGCTGCTGCTGCTGCTCCATTTTGTATTGCTGGGAAATTTTAG
Seq C2 exon
GAAATGGAGTCGGATCCTGATGACGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000061736:ENSDART00000149630:35
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.065 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCAGAGATATAGGCCAAGAGC
R:
TCGTCATCAGGATCCGACTCC
Band lengths:
149-399
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]