DreINT0041196 @ danRer10
Intron Retention
Gene
ENSDARG00000041864 | capn3a
Description
calpain 3a, (p94) [Source:ZFIN;Acc:ZDB-GENE-040912-97]
Coordinates
chr17:45339649-45342363:+
Coord C1 exon
chr17:45339649-45339809
Coord A exon
chr17:45339810-45342193
Coord C2 exon
chr17:45342194-45342363
Length
2384 bp
Sequences
Splice sites
5' ss Seq
CAGGTGGGT
5' ss Score
8.56
3' ss Seq
ATTTCTGTGGTCTCCTAAAGACA
3' ss Score
4.77
Exon sequences
Seq C1 exon
GATGTCGTTTGAAGATTTTAAGAAAAATTACACCAAAATTGAGATTTGTAACTTGACACCTGATGCCCTGGAGGACGATAAGCTACATAAGTGGACAGTGTCTGTCAATGAGGGCCGCTGGGTGAGAGGCTGCTCTGCCGGAGGATGCAGAAACTATCCAG
Seq A exon
GTGGGTGTCAAAACAACTAAAAGAAAATTATTTTAATGATAATATTAATTGCACGGTGAATTTGGACAGCACCTTTTATATGTAATGTGCACCTTAAAGTGATTCACAGGTCAAAATGAGCAAAATAATAATGTCTTGTAAGAAGTGAATATTAATGGTATTTCTGTCCCTCAGAGCTTAAGAAATTATTAGTAAATGATTTAGTTCAGAATACAAACTTAGATTTTAGTCTTAAAGAAAAAAATTAATAATTATTATCTTAGAATGATTTGCCGGAGTTAGTGCTGTCAACCTCACAGCAAAAAGGTCGCTGGGTCGATGGTTCGATCCTCGGCACAGTTATCGTTTCTGTGTGGAGTTTGCATGTTCTCCCTGCGTTCGCGTGGGTTTCCCCCGGGTGTTCCGGTTTCCCCCACAGTCTAAAGACATGCGGTACAGGTGAAATGGGTAGGCTAAAATTGTCCGTAGTGTATGAGTGTGAATGAGTGTGTGGATGTTTCCCAGACATGGGTTGCGGCTGGAAGGGCATTTGCTGCGTAAAAATGTGCTGGATAAATTGGTGGTTCATTCCGCTGTGGTGACCCCGGATTAATAAAGGGACTAAGCCAACAAGAAAATGAATGAATGAATGAATGAATGAATGAATGAATGAATGAATTGTCAATTTTCCTTCAGCTATTGGTTATTGGAGATCACAATTTCAAGATGTTAACTGGAACGAGACTTTTAAGATTTCCAGACATTTTTATATAATAAATAAAACTTGAGAGGAATCATTTAAAATTGATCATGGAATTTATACTGTACAACAGGTAATTGCAAGATTTTGTAAAGATGTTGATTTAAAATGTACTTTCTGTAACGATAAAGAAGAGAGCATTGTTCATTTATTTTATAATTGGATTTATACGCAATTGTTTTGGTGTGATCTTTTCTTTTTTGTTAAGCGAAGTACGAATATTGCATTGGAGTTCAAAGAAAAAGATGTTGTTTTTTTATGAGAATACAGTCGACTTCAAAATTTGGCATAGTGTTAATTTGCTCATTATATATGGAAATTTTTGTATTCATAAATGTAAATGGGCAGTGAAAAAAACTAATTTTACTCACTTTAAAATAGAAATAGGTAGGGATGTAACAATATTGTAAATACCGTCATACCACAATAGTAATTTTTTTCAATATTACCGTAGGCGCATGACTCAATAAAACTATATTTCTGAGAAAAGTTTGCTCAGGCAAATGAAGCGAACGGGAGGTAGCGGGAACTACAATTCCCATCAGCCCAGGCGTGGCCATCATCCTTTGCGTTCTGTTGTCACTACAGATCCAGTAATGACGAAATGGAGTGTGTTGCTAGAAGCGGGGAAGAAAAAGAGCTGGAAATGATCGAACCTAAAGCGGGTTTTAAATCGGATGTGTGGAAGCATTTCGGTTTCTTTCTAAAAACATACAAAAAAGAAGAAAAGGTGACAGACAAAGGAAAAAAACTATATGCAGGCACTGCCAGACTGTAGTGAAATATAAGTCGGGGAATACGACTAAAAACAGTCATGGGGACTGCAGAACACAGCACACTGTTCAGATTGATGCAGACATTGACTTGTACCGCAAAGAGACCTCTATCTCACTCATGGCTTGTCCTCTCAAGTGGTGGAAAGACAATGCACAACGTTACCCACTGCTGTCAACCTTGGCTAAATCATATCTCTCTGTCCCAGAAACCTCAGTCCCAAATGAGAGGGGGGTTTTTCTGTTGCAGGGGACATGCCCAGCTTTTACCAGATTATAGTTATATGATAATTTTCCTTAAAAAACCCATCTCTATCTAAATGAGTGATTAAATGTTGAATGTGATGAGTTTTCAACAATACTAAATTGAAACTTTATTTTTTTATATGGTTTAATAGTTTTTTGTTATTAAAATTGAAAAATTGAAGTTCCTGTTTCGAAACTTACAGATAGGTGACTAATTTGTATGTCATTGATATGTTCAGTGCTAGGGTAAATAAACACTTTTGGCACTTTTTTGAGTCTTTTCATTAGTTTTGTTTTTCCTGTAAATTATTCAATAAATACCATACCGTGCCATTCATACCGAGGTATTATCGTACCGTGAAATTCTGATACCGTTACATCCCTAGAAATAGGTCATTACCTATGCACGATAAAAGAAACAAAATATACCAAAGCAAAAAGAACTGTTTATTATTGTGAAGCCTTCAATTTTGTTTTTTGAATAATTGTATTTTTTATTTTCTTCTTATATTGCATTTGATTGGATGTTAATTTAATGTTGTTATTGCCCTGTTATTCTGTGTTCTAAAATTGCAAAAAATAAATTAATTAATAAAAAGAAAATGTATTTCTGTGGTCTCCTAAAG
Seq C2 exon
ACACATTCTGGACAAACCCACAATACCGTCTGCGTCTCCTGGAGGAAGATGACGATCCGGAGGATGATGAAGTGGCCTGCACATTTGTTGTTGCTCTAATGCAGAAAAACAGACGTAAAGAACGCAAGTTGGGTGCGAATCTCTTGACCATTGGATTTTCCATCTATGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000041864:ENSDART00000148667:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.052
Domain overlap (PFAM):
C1:
PF0064816=Peptidase_C2=PD(11.6=34.5),PF0106717=Calpain_III=PU(15.5=43.6)
A:
NA
C2:
PF0106717=Calpain_III=FE(36.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]