DreINT0060563 @ danRer10
Intron Retention
Gene
ENSDARG00000103195 | dync1i2b
Description
dynein, cytoplasmic 1, intermediate chain 2b [Source:ZFIN;Acc:ZDB-GENE-090121-1]
Coordinates
chr6:3771606-3774025:+
Coord C1 exon
chr6:3771606-3771724
Coord A exon
chr6:3771725-3773916
Coord C2 exon
chr6:3773917-3774025
Length
2192 bp
Sequences
Splice sites
5' ss Seq
CAAGTAAGA
5' ss Score
7.61
3' ss Seq
GATTTGATTTAAACGTGCAGAAT
3' ss Score
4.3
Exon sequences
Seq C1 exon
CCCAGATCCAGCGCCGCCGCTGCTGTCACAACAAGAGAAAGAGGATAATAACTTATTAGTCCGCTGAAGAACAATAATCCTCCCCGTACAGACTCCGAGCCGCTAACAATTTATTTCAA
Seq A exon
GTAAGACTAATGTTTTTCCTCACTAACAGTAGTATTTTCTCTGTTAAAGTGAATAATAGTGTCTTTAATGGCGATGTTTCAGCATTGATTCCTGAGGGCCGTTGACGTGTGCGGTTAACTGTCATTTACACTGGACGCTAAGTTACCTTACAAAGACTTACTGAAATAAACACAAACAAAGCAGAAAACCACTTCCGTTTTAAAATATGAACACAAATGGTTTGTAGTGTTAAAAAAACAAACATAAAATGAACAGCTGATGCAACTAGACTGATGGTGTAACGTTAGTATTATTTATTGCGCTTCAAATAAACGGTTTCGCGCGCGCAGCTTAAATAATGTAAATAAAATGTTATTAAAGTGTTTATCGTTTTAAATTGTGTTTTTTATGTTAGTTGTGAGCTTTCAACCGGGGTTTTCGCTATGCAGCCATATTGACTGACCATCCGGGACTCTTACAGGAGTGTCCCGTGTGTGTGTGTGTGTGTGTGTGTGTCATTGGGTTTGTATAACTTACTAGGCTAAATAAACTCATTGAGCTCTCTATTAATAAACAAAAACAAACGGTTATTAATTAAAAATTATTATTAATATAATAATTATTATTTAATGAAGTCACATATGTGATTTTATACATGTAGTTTGCTCATAAATATCTATTCTAGCATACTGCCAACAGTGATGTCATTCAGAAGTAGTTTAAAGGGACTGAGTTTGAGTAAATGATGAAGACATTTCAATTTTTAGATGAACTATCCCTTTAATGTAGTGGAATTATAATGCAATGGGATTTTAAAATATAGTTTAACTACTGTCATGTTTTTAAAATGGTTTTCATATTTTAGAAGCAAACATATTTTCAGTAATGTTTGAAATTTGACCTGTTGAAAACTTTATCAACTAAACACAGCATGGAGAAATTAATAGTTTTCATATATTTAATATATTATAGTCCTGTTTATCAAACATTTTGTCTATTTTGTATTATTCTGATGAATGTGGACATTTATGATGCATGAAATATTAAATCTGGTTTAATGGCTGTGTTTTGATAAGATTAATATTAACTCAGTGGAAAATACGTTGCAGATGTGAGAGAATAAATTGCTTCAATTAATCCAAATTGTGTTGTGAAACTTGTGGAATAAAAGCTATTTTCATTGATAAATTGCCACCCTAATGAACCATTGCTATTTTCAATAAGGCATTGTTTTTGTTAAATACAACCGATCAAAAAAGCACAGATAAATAGATAGAAAGATAGATAGAAGGATGGACAGACAGATGGTCAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATACATACATACATATTCTGTAGTAGTTATTTGAGCAGTGGACTGTTGACGAAGCATGGTGTGTTTGCAGTACTGGATGAGCTCATGGGTGCGGACCAGAATGACCTCAGTCTGATTCCCACAATGACCACTAGAGGCTGCCCATGTAATATCTGCTTATAAACAGAATGTATGAGACTGTAATGACCATGCCATTATATCAGGTTATGATTGTTAAAACTGTGCAAATATGTTAATCAAAGTAAAATAAATAAAACAGATTAAGTTATTGTTACGCTAGTTACGAAGGCAACTTTCATTTAGTTGAACTTAAATCAATAAAATAATTAAAGTCAAAAAATTATTTACATTAAATAAAAATTATTTGGAAATATATATACACATACATATATAATAAATTAATAAATAATTTAAACTGTATAGACATTAAAAAAAACAAAACAGTATGTTTATAATAAATTACCCATTTGTTGCATTTTAATGAAAAAATATATAAACAAAAAATTAATAATTTAAATTTTGACAAACACGCTATAATAATGACAGATAACACTGGTGGTTATACATGATATATAGCATCATTTGAATTGTAATTATTATCAAAACCTTATAAGCAAATATTAGCAGCAGAAAGTAAATAAAATACATACAATTTTGCTATAATTTGTTAAAAGCTCTTTGTTTTGAAGACTTCTTGTTTGCATTGTGTTGTAAAAAAGCCTTTATTTTACTTATAATTACATTGATTACTTGATTTATTTTTGCAAATACACTAACAAGGCCTGATTTGATTTAAACGTGCAG
Seq C2 exon
AATGTCTGACAAAAGTGAGCTGAAAGCGGAGTTAGAAAGAAAGAAGCAACGTCTGGCCCAGATCAGAGAGGAGAAGAAGAGGAAAGAGGAAGAGCGCAAGAAAAAAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000103195:ENSDART00000159673:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=1.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]