BtaINT0053557 @ bosTau6
Intron Retention
Gene
ENSBTAG00000002646 | DYNC1I2
Description
cytoplasmic dynein 1 intermediate chain 2 [Source:RefSeq peptide;Acc:NP_001069351]
Coordinates
chr2:24859362-24860776:-
Coord C1 exon
chr2:24860679-24860776
Coord A exon
chr2:24859479-24860678
Coord C2 exon
chr2:24859362-24859478
Length
1200 bp
Sequences
Splice sites
5' ss Seq
CAGGTGGGT
5' ss Score
8.56
3' ss Seq
ATGATTGTATGCTTCTTAAGGTT
3' ss Score
6.97
Exon sequences
Seq C1 exon
AACTAGTGGTGGCGGCTGTTGCTGTTGCGGGCGAAGGAGAGGGACGTTACCGGGAAGTTGCTGGCAGGCGGACTCTTCCCCATCCCGCCACCGAACAG
Seq A exon
GTGGGTGGACGGCCCTTCCGTCTCCTTCTGTCTGCTGTGTCTCGGCCCTAAGGGCGGCTTGGCCTGCTGACAGTGCCGCCCAGCCCAGCCCGGCCCTGGGAAGGAGAGGCGGGGTGAGTCAGGAAGGCCGGGGCCTCGACGAACCCACTCACTTCTCTCTGGACCCTTCGGAGGGGCCCCGAGAAGCCTTGATGCTCGTTCGAGGCCACCTCCCTAAGACGCCCTAGGTGAACCGCGCCCTCTTGGTCCATACCCAGGGGAGAAGTGACTCCTTTTCGCCTTGCTCAACCGGTGTGTGTTAGAAAGTACCCAGACGCGGAGATTGTAGCACAAAATTCCTGAGACTTTATCTTTCTTGGAGTTTTAAGAAAGTGAATGTGTCAGGCTTGGAGGCTCCGGCCTCTCGCAGGATGAGCGATTCTGTCACCTGTATGCAATTATTCAATCAGACTTTGTTGTTGGGCTTTGACTCAAAGTGTGTTAGAGTCGCTCAGTCATGTCCGACTCTTTGCGACCCCAGCATACTTAAAGCGTGTGTGTGTGTGTGTGTTGTATGTTGTGTGTTGTAGAGCCCGCCAGGCTTCTCTGCCCATGGGATTCTCCAGGCAAAAATACTGGAGTGGGTTGCCATTTCCTTTTCCAAAGGGATAGAATCCTGGTCTCATGCATTGCAGGCAGATTTGTTACCGCCTGAGCCACCAGGGAAGCTCTACCTTTAAGTACAATTGATAGTTAGGTATATTTGTGTTTTGCTTCTCCATAGTATTACTATTGCATGGTAGTCTTAGAATTTATAGGAATTTTCTGTCTGGCTGCCTGTTTTATCAGATTTCTAGGAGTGAATGCAAAACCGGTAGCAGATTTGCTGTGTCTTGGCTTTTAATGGCAATCCACGTCCTCTGTTTTAAGAGCCAGAGACTTTGTGTTAAATTTGAGCGTGTGAACATTAAAGAGTTTACTGAGTGCTAATTACTATGCTCAACTGTGAATATTTCCTATATACATCTGTTTATAATGATTTTCAGGTCTCAGCAGTATATATGCTTCTTTTATTTTAAAAGTAGAGTGTACATGTTCTCGTTTGATGACCTTGAATTACATGGCCTTTCAAGACAGTTCTCTTCTTGAAAGACAGAGTTTTAAAAGTGTGCTCCTTTTACCAATTTAATGATGATTGTAAATGATTGTATGCTTCTTAAG
Seq C2 exon
GTTGCAAACATGTCTGACAAAAGTGAATTAAAGGCAGAATTGGAACGTAAGAAGCAGCGGTTGGCTCAAATCAGAGAGGAAAAGAAGAGGAAAGAAGAAGAAAGAAAGAAAAAGGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000002646:ENSBTAT00000003429:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=1.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACTAGTGGTGGCGGCTGTT
R:
TCTTTCTTTCTTCTTCTTTCCTCTTC
Band lengths:
207-1407
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]