GgaINT0050352 @ galGal4
Intron Retention
Gene
ENSGALG00000009551 | DYNC1I2
Description
cytoplasmic dynein 1 intermediate chain 2 [Source:RefSeq peptide;Acc:NP_001006519]
Coordinates
chr7:17483517-17485000:-
Coord C1 exon
chr7:17484901-17485000
Coord A exon
chr7:17483635-17484900
Coord C2 exon
chr7:17483517-17483634
Length
1266 bp
Sequences
Splice sites
5' ss Seq
CAGGTGCGC
5' ss Score
9.1
3' ss Seq
GTGATTTCTGTGTTGATCAGTGT
3' ss Score
5.79
Exon sequences
Seq C1 exon
AGCTGCCGCCGCCTTTGTGGAGCTGGCGGAAGCGGAGCGGGCGCTGGGCCGAGCCGAGGGCGGAGGGCGCGGAGCTGAGCTGAGCGGAACCCTCCGGCAG
Seq A exon
GTGCGCGGGGTCCCACGGCGCGGGGCTGTGGCTGTGGCTGTGGCCGTGGCGCCGCGCGGCCCGGCCCGGCCCGGCCGTGAGGGACGCGGCCGCGGGTGGGGCCTGGGAGCAGAGCGCGGCCCGGGGACAGCGTTGGGTGGGGACCGCCGTGCGGGGACTCCGCCGCCCGGCCGGTGCCTCTCTGCAGTGCCGGCGTTGTGTTATTGTCTGTTTATTAACGCTTAAATGTTGGCAGAGAACGTGGCTGAAAAGCTACCGACGTGAGCACTGGGGTTAGTGCGGGAGGCTCGCATCGTGTTCTGCTCTTAGATGTGCTGCGCGCACACGTATGGGTGTTCTTCTTTTGCACGCGTGAGTGGTTGTATCGCTGAGGCGTGTAACAGCCCGGTAGGTCCCGCAGCCGTGCCAGAGCCACTCCTGCACTTTGGTTACTGGTGTGCATTTGCTGAGCGGGAAGATGCAGCTGCTGCTGGCCCTGCCCGCTCACACAGCTTTTCCTGCCTGTCTTCTGATTTGCCACCTCCTGAAGGGGTTTGGGTTTTGTCTGCTTTTGTTCATGCTTGGCTTTCCCACCTGTGCTTAATCACATGGCGTATGGAACAAGTCTTCGGTAGAATTCCTGTCATTGGAAGCCCCACCCATTTCTTAGCAGCATGCACAAGATCTATAAATGAAAGACAAAAACATCAGCGTTGCACATACTTCACAGGGTGCTTTTGGCCATCCCTCCAGTACCTGCTTTCCTTGCCATTTACAGTAATTTACTGCATCTTTGATTAGGTTGGTCTTTTGGCTCCTGCAAGCACATCTAACTGGATACATTGTGTTCATCCTGCTAGGTTATAAAATGCCAGTAATTAAGGGGCTGCAGTGACAAGTGAAAACGTGTGGGCACCTTTCTTACTGTTTACTGTGTGTAAATACCATAGGTGGCTCTGAGGCTGTACAGAATTCTGTGTAATATAATATAACCTCGTCTTCAGAGTTCTGTGTATCATTCAAAGTAGTGCCTCAAAAAAAGCTTCAGAAATACGTTGGGGAAAGGTGCTGTCACCTTGTCATCCTTCTCTTTCTTTAAATAGATCTTTTTAGCAGTGAGAATTTGCTAAGTGTGAAAATAGGAATGTAACTTCAATTATGATTTTAGGACTTTTCACTGTTTTGTCTTTAGCCACTTAGCATAGTCATATTAACAATAGCAGTTGTCCTGCAAATAAGCAATCTTAACCAAACAGAACCGCTTGGAGTGATTTCTGTGTTGATCAG
Seq C2 exon
TGTTTCAGTCATGTCTGACAAAAGCGAACTGAAGGCGGAGTTGGAGCGCAAGAAGCAGCGATTGGCTCAGATCAGAGAGGAGAAGAAAAGAAAGGAGGAAGAAAGAAAGAAAAAAGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009551:ENSGALT00000015547:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=1.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCGCCTTTGTGGAGCTGG
R:
TTTTTCTTTCTTTCTTCCTCCTTTCT
Band lengths:
206-1472
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]