RnoINT0052070 @ rn6
Intron Retention
Gene
ENSRNOG00000009781 | Dync1i2
Description
dynein cytoplasmic 1 intermediate chain 2 [Source:RGD Symbol;Acc:620174]
Coordinates
chr3:57817693-57820635:+
Coord C1 exon
chr3:57817693-57818037
Coord A exon
chr3:57818038-57820518
Coord C2 exon
chr3:57820519-57820635
Length
2481 bp
Sequences
Splice sites
5' ss Seq
CAGGTGGGT
5' ss Score
8.56
3' ss Seq
AATGTTGGTGTGCTTTTAAGGTC
3' ss Score
8.71
Exon sequences
Seq C1 exon
TGCGTACTCCGCCCCAGGATGTGAGGTGTAGTTGTCCAGCTTTTGCCAAAGCGGAAACGCTTCGGATCCCGCGGCCGGTGTGTCTCTATTTCACCGGTCAGATTCTGTTTTGCAAAAGGTAAGTCACGGAAAGGGCGCCCTTCCGTGCCGGGCGGTAAAGATTCTGTTTTTGTGGGAGACCGCGTCGGCGAAGTCATTTGTCCCTTGGCTCACGCCGTAGTGGCCGCCGCCCATCCCTCTTTGTGTGCTTGGGACGCCAGGGATCTGCGGTGGCGACAGTTGGAGAGGGACGTTCCCGGAAAGTTACCGGTCAGAAGAAACTATCTCCACATCACCACCTGACAG
Seq A exon
GTGGGTCGGCTGCGCTTCCTTCAAGGCCCTTTTGCCTCTGATGGCTGCTTCGGAGCTCGCGGGCCCGCCCGCCCGATGTACTGACGGCGCGGGTCCGGGTGACTTAAGGCGGCCTGGGGAGGCCACCGCGGCCCTTGGCAACCCATCCGGACCCTCCGCAGGCGGCCCAGACCCTAGGAGTTTGTCCCGCACTGGTCTGGCGGTCCCTAGACACACCCCAGCCCGGACCGCACCCTCTTGGCCTTAAGCCCTGGGAGAAAGTAATTCCTTAAGCTTTGCTTGTTTTTTTATTAATAAAAGTCACTGCTACTTGGGTCAGTAGCATGACCAGGCACCTAGTGTTGAAGGTCGCTGAACACTGAGGTTGTAAACATTCTAGACAGTTTCCTTTCTCCGGAGTTTTAAGAAAATGAACCTGTCAGTCACGGAGCCCTGGCCTGTCTGAGAGTGAGGGTGCTAACTGAACGCCTATGCTTCAGAGGGACAGAATAGTTATGGTTGACAGAAGAAGTATTTCTTTAAACTAGATAGCAGGCAGTATTGGTATACACGTTGACAATTGGCTCAAAACAGAAAACTATAAGTATTATTTATAATACATAATAATAATTATTTATAATACATAATAATACAAATAATATTATCAGAGTAATAGGTTTGGAAGCTCTTTTCAACAGCCTTTACATATTATTTGGAGACCTGAAAGGGGTGGGCGAAGAAACATGAGCTTTGCTTTGCGAATTTGTTTAAATAACTTGGTTGGGAGTATATGTAAGAGTGTATATGAAATGAATTTACCGTTACCTGCTCGCCAGTTTTTGCAGCACTGCCCTGTCTTTCTGACGTACTCTAACCAAAATACCTCTTTTTCATTTGCATAGAAGAATTTTTTCGTTTTCATGGATTAATTTTGCCTCCTTACCAACTTGCCCTTCATCCAAATTTATTGAGATCCTAAGAGATTCCTAAACTCCTCAAGAGGTTATTCACTGAGTTTTCCTTGATCGAAAGCATTTAATCCTGCAGTTGTGTAGAGGGAGACACTGACAGAGATTAAACCAGTAATGTAGAGAGGGTAACAAGGTCCTGGCTCGGTTGGGGATTTAGCTCAGTGGTAGAGCGCTTGCCTAGCAAGCCCAAGGCCCTGGGTTCGGTCCCCAGCTCCGAAATAAAAGAAAAAAGAAAAACAAACAAACAAACAAACAAGGTCCTGGCTCCTACCTTACACTGAGCTCCTAGGTTACCTTTCCAGTTCAGAAAGCTCCTACTTCCTCACTCCTTCATAACAGGCAGTATGATGACAGGATCATGTTTGTAAGTCCATCTCCTTTGCAGGTGAACCACTTAGCCACTGTCAGCTCAGTGTTAAGGTTGCTGTGATGTGAATGTGACAAAAACACAGTCCCCGATTCAGTGAGATGACTGTCTACTAGGGAACATTTCAGGCCGTATAGATAATCATATAAAAAGGCCACAAGAACGTGTTAAGGTGGAAAGATATTGTCTGATTGATTGTGGTGGAACATCTATAGAACTTAAAAGAAGTTTTAGGAATTTCCTGTTTAGCCTTTCAGTGTTTTATCAAGTTTCTGGGAACAAAATGCAGACATCTCTGGTAATAGTCTTGGTTTCATAGCTGAAGATGTAAGGGTTCTTTTTTTTTTTAATATTTTTTTTAAGATTTTTTATTCATTTATTACATATAAGTACACTGTAACTGTGTTCAGACACACCAGAAAAGGGCATCGGATCTCTTTACAGATGGTTGTGAGCCACCATGTGGTTGCTGGGAATTGAACTCAGGACCTCTGGAAGAGTAGTCGGGTGCTCTTAACCACTGAGCCATCTCTCCAGCCCGTAAGGGTTCTTTAAAAGCCTGTCTTGCTATGTACCGCCCAGTTTACCTGGAACTCAGAATCTTTGTGCTTCACTTCCAGAGAGCTGGGGTTACAGGTGTGAGCCCTCATACTCTGCCAGGACTTAAGCCAACAGTGTGGTTTGTTTTTAACATAACATAACACTAGTTATGACCTTTATTACCTAGTACTCAAATACAGAGTCATCAGAAAACATCAAATCTGGGTGTGCTGGATGACTCTAGCACACCAAAGTCTGAGGTAGGAGAATTGCTATGAGGACATCCTAGGCTACATTATGGTTTCAAGACCAGCCTGGCTACAGAGTGACACATTGTTAAATGTGGGCTTAGAAACATGAAAGCACTTGTGTGCTAGATTATGCTCAAGTCTAGGAAATACTTGTATATGCATTTGTTTATAATTTTATCTTACCTTTTAAACCATATATATATATATATATGTTTTTATTATTTTAAAAGTAGAACTTATGTTTTCTCCATGGGTACCATTGAACATCTTTTAGCTTCTTGGCATACTTCTTGAAGTACTGATTTGTTTTTAAAAGCCTGATGTTTTTTTAAATCAATGTAATGATTATTGTAAATGTTGGTGTGCTTTTAAG
Seq C2 exon
GTCACAACCATGTCAGACAAAAGTGAATTAAAAGCTGAGTTGGAACGTAAGAAGCAACGGTTGGCCCAAATCAGAGAAGAAAAGAAGAGGAAAGAAGAGGAAAGGAAAAAAAAAGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000009781:ENSRNOT00000013400:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=1.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]