HsaINT0053154 @ hg38
Intron Retention
Gene
ENSG00000077380 | DYNC1I2
Description
dynein cytoplasmic 1 intermediate chain 2 [Source:HGNC Symbol;Acc:HGNC:2964]
Coordinates
chr2:171687470-171690263:+
Coord C1 exon
chr2:171687470-171687627
Coord A exon
chr2:171687628-171690146
Coord C2 exon
chr2:171690147-171690263
Length
2519 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGT
5' ss Score
10.86
3' ss Seq
AATGATTATATGTTTCTAAGGTC
3' ss Score
5.79
Exon sequences
Seq C1 exon
TTCTCGATCGTGTCAGTTTGTAAGGCGAGGGCGGAAGTTGGATTCCTGGCCTGAGAATATTAGGCGTAGTTTTCCAGTTTTTGGCAAAGCGGAAATACTTAAGGCCCCTGGGTTGACTGGGTTCTTTGTTTTATCTACCGGCTTCTGCTTTACGACAG
Seq A exon
GTAAGTCACGGAGGGGCTACAATTCCTCGCAGCAGGGCCCCACCTTTTATTTCTGGGAGCGACCTCGTTCTGGTGAGGCTATTTGTCCCTAAGCTCTCGCCGTAGCAGCCGCCGCCCATCCCTCTTTGTGTGCTTTGGAAAGCCGCGGAGCTGGTGGTGGCTACAGTTGGTGTTGGGGGCTTAGGCGAGGGACGTTACCGGGAAGTTGCAGGCGGGAGGACTCTTCCCCATCCAGTCACCTGACAGGTGGGTTGACTGTTCTTCCCTCAAGGCCTCCCTGCCTGTGTTCCACGTCGCAACTCGAAGGGCGGCTTGGCAGTTCCTGCTGACATCCCCGCCCGGCCCAGCTTTGGGGAGGAAAGGCGGGGAGACCTGGGTGCGGTGACTCATTGCGGCCCGGCGAGAGGAGTCCACTCCTTTCCCTTCTCGACCCTCCAGAGGCGGCCTGGGGAGCCTTGAGGCTTGTCCGGCGCCCACTGGCTTCTTCCGGACGCCCTGCCGTGGACCGCGCCCTCTTGGCCGTGACCCCAGGGGAGAAAGTGATTCGTTTTCGCCTTGCCCCATTTTACAAATTAAGGCCATCTCTACTTGCCTTGATAGTGTCTCCCCTCACCTTATGTGTGATGGAAAGCCCCCGAACACGGAGGTTCTAGCACAAAACTCTAGAGACTCTCTTCTCTTGAGTTTTAAGAACGTGAACATGTCGGTCATGGAGGAAGGCTCTGGCTTCTGTGAGGATGAGAGGATTGGTCAGCTGTAGTTCAGCTGGTCAAGACTTTGTTGTTGGGCTTTAAAAATGCGCTTATTTTAATATCAATTAGTGTTGGTATATCTGTTTTACAGTTGACGTTGAACAAAATATAATGTGCCTAGCGTAGCATACAGTTACGTATGGAAGTTCTCTTCACCAGCCGTTTGTATGGAGCTGTTTAGAGGTGTAGAAAGAGTGGAATAAGAAACACGGTCTCTTGCTTTTAGTTTGTTCAAACAAATCTTGGAAGATATTGTGTATATATTTCAGGTCTGCTATGTCAACTTTTCATCCTTTTCGTATGCTTGAAAATTATCAATTCGCTTGCCAGTCTTAATGGAGTTTAGTAGCTGAAATTTCCTTTATCCACTTCTTAGTAGGTGAATTTCTCCTCTTGACTGACTTACCTTTGTTCAGATTTAACAATTGTGCTTTTTAAGAGATTTCCCCTAACCTCTGGAAATACAGTTTTCCAGAGGTTATTCTCCTAGTTTTCTTGATCTAAAGCATTTAATACTTCACTTGTACAGAGACATTGAAAGAGATTGATCATTAGGCAATAAGTCAATCATGTGGAGAAGGTAAGGAGTTCCTGGCTCCTGCCTTATGCTCAGCTGCTAGGCTACTTAAAAAAAAAAAATCCTAATTCATTATTTCTTCCTAAAACTCAAGCTGAAGTAGTGTTTATGCAATTGGTTTTTGAAGCTCAGATTGTAATTGTGTCTACCGTATCCATTATTCATTAGCCAGTGTCAATTGTAATGTTAAGGTCATTCTGCTGGATGTTGTGAAGGCAACAAAAATAACTAAAAAACAGTCCCTGATTTCAAGTACATTACAATCTAATAGGGAACATTTCAGGTATGTCCACAAATAATTGTACTAAAAGTGCCATCAGAGGTATACGTAAGGTGTTATTGTGGAGAAATACAGTCATATGATTTGATAGCTAATGATGGTAACTCCTGCGTTTTGCTTTAGTATTACTACAGCACTTTTAGAACTTACAGGAAAGTTCAGTTTGACCTATTGTTTTTTATCAAGTTTCTATGAATGCAATAGAATTGGTAATAGTTTTGATCTGTGTCATATAGCTTAAGAGCTTCTAAATGCCAAACCATGTCCTCTGTTTTAAGAGCCAGTTTTGACCTTTATCTTGGGTACCTAATATATTGTCATCAAAAACTTTGAGACATTGTGTTCAGTTTGTGTATGCGAACATTAAAGTGCTTACTATGGGCTAGCTACTATGCTCAGCTCTAGGTAATATTTATTATATATATTTGTTTATACATTTTTTAAGTCTTAGTAATAATATATATGCTTCCTTTATTTTATCTTTTAAAAGTTTATTTTTTAGAGACGCTCTGTTGCCCAAGCTGGAGTGCAGTGGCATGATCACGGCTCACTGCAGCCTTGACTTCCTGGGCTCCAGCAATCCTTCCAAGTAGTTGGGACTACAGGCACATGCCACCATGCCGCCTAATTTTTTATTTTTCTTGCCTTTTTTTTTTTTTTTTTTTTTTTTGTAGAGATGGGGTCTTGCTTTGTTGCCCAGGCTGGTCTCAAACTCATGGCCTGAAGCAGTTCTCCCACTTTAGCCTCCCAAAGTAAGCTACTGCCCAGCCCCATTATTTTAAAAGTAAGGTTTTTGTGCTTTTTTGAGATAGCATTGAACTATATGGCCTTTCGGGACAGTTCTCTTCTTGGAACACTAGTTTTTTCAACTGTGCTGCTTTTACTAACATAATGATTATATGTTTCTAAG
Seq C2 exon
GTCACAAACATGTCAGACAAAAGTGAATTAAAGGCTGAGTTGGAACGTAAGAAGCAGCGACTGGCCCAAATCAGAGAGGAAAAGAAGAGAAAAGAAGAAGAAAGGAAAAAAAAAGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000077380:ENST00000397119:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.991
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF142651=DUF4355=PU(39.8=97.2)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
ENSP00000339430, ENSP00000380308, ENSP00000386397, ENSP00000386415, ENSP00000386522, ENSP00000386591, ENSP00000386886, ENSP00000388699, ENSP00000392741, ENSP00000394492, ENSP00000397654, ENSP00000398765, ENSP00000401005, ENSP00000405454, ENSP00000406104, ENSP00000409951, ENSP00000410807, ENSP00000415410, ENSP00000423339
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development