MmuINT0054181 @ mm9
Intron Retention
Gene
ENSMUSG00000027012 | Dync1i2
Description
dynein cytoplasmic 1 intermediate chain 2 [Source:MGI Symbol;Acc:MGI:107750]
Coordinates
chr2:71050070-71052612:+
Coord C1 exon
chr2:71050070-71050131
Coord A exon
chr2:71050132-71052495
Coord C2 exon
chr2:71052496-71052612
Length
2364 bp
Sequences
Splice sites
5' ss Seq
CAGGTCGGT
5' ss Score
7.53
3' ss Seq
ATGTTGGCATGCTTTTTAAGGTC
3' ss Score
8.04
Exon sequences
Seq C1 exon
AGAGGGACGTTCCCGGGAAGTTACCGGCCAGAGAAAGCGATCTCCACTCCGCCACCTGACAG
Seq A exon
GTCGGTCGGCCGCGCTTCCTTCAAGTCCCTTTTGCCTCTGATGGCCGCTTTGGAGCTCGTAGGGCCGCCCGGCCGATATTCTGACAGCGCCGGCCCGGGTGACTCAAAGCGGCCTGGGGAGGCCACCAGGGCCCTTGGCAACCCTTCGGGACCCTCCGCAGGCGGCCTGGACCCTCGGGATTTGTCCTGCACCCGTCTGGTGGACCTCGGACACACCCCAGCCCGGACCGCACCCTCTTGGCCTTAAGCCTAGGGAGAAAGTAATTCCTTAAGCTTTGCTTGGTTTTTATTAATAAAGATCACTACTACTTGGGTCAGTAGCAATGACCAGGCACCTAGCGTGTGTGTTGGAGGTCTCTGAACACTGTGATTGTAAACATCATTCTAGACACTTTCCTTTTTCCGGAGTTTTAAGAAAATGAACCTGTCAGTCACGGAGCAGAGGCCCTGACCTGTCTGATAATGAGGGAGCTAACTGATCGCCCGTGCTTCAGCGGGACAAAATAGTTAGAGTTGAAGGAAGAAGTATTTCTTCAAACTAGATTCCAGGCAGTATTGGTATATTGTTGACAATTGGTCCTAAACAGAAAATAATATGTATTATTTATCATACATAATACAAAAAAAAATCATACAGAGTGATGTGTATGGAAACTTTCTTCAACAGCCCTTACAGTATGAAGCTTTTTAGAGACCTGAAAAGAGTGGGTGAAGAAACACGAGCTTTGCTTTGCGAGTTTGTTCAAATGACTTGGTTGGGAGTATATATAAGAGTGTATATTCTAGCTGCATATGTATCAAAAGATGGCCTAGTCGGCCATCACTGGAAAGAGAGGCCCATTGGATACGCAAACATTGTATGCCCCAGTACAGGGGAACGCCAGGGCCAAAAAGGGGGAGTGGGTGGGTAGGGGAGTGGGGGTGGGTGGGTATGGGGGACTTTTGGTATAGCATTGGAAATGTAAATGAGCTAAATACCTAATAAAAAATGGAAAAAAAAGTGTATATTAAAGGGATTTCCTGTTACTTGCTCACTAGTTTTTGCCCACTGTCCTGTCTTTCTGAAGTACGCTACCAAGAATTCTCCCTTTTTCATTTACATAGAAGAATGTTTTTCATTTTCATAGATGAATTTTTCCTCCTTACCAAATTTGCCCTTAATCCAACTTTATTGTGATCCTAAGAGATTCCTAGACTTTTCAAGAGGTTATTAACCCAGTTTCCTTAATCAAAAGCATTTAATCCTGCAGTTGTATGGAGAGAGACACTGACAAAGGTTGAACCAGTAATGTAGAGAAGGTAACAAGGTCCTGGCTCCTACCTTACATTGAGTCCCTAGGTTACCTTTCCAGTTCAGAAAGCTCCTCGTTCCTCCCTCCCTCCTGCATAACAGTCAGTATGAGGACACGCTTGTGTTCGTAATCCCATCTACTTTGCAGATGGATCGTTTAGCAGCTGTGAGCTCAGTGTTAAGGTTGCTATGCTGTGAAGGTAACAAAAACCATAAAAACACAGCCCCCAACTCATCCAGATGACTATCTACCATGGAACATTTCAGGCCCATATAGATAATCATAAGAATGCCACAAGAAGGTGTTAGGTGGAAATATACTGTTTGATTGATTGTCATGGAACATCTATAGAATTTAAAAGAATTTTTAGGAACTTCCTGTTTAGCTATTCAGTGTTTTATTAAGTTTCTGGGAACAAAACACAGACATCTCTGGTAATAGTTTTGGTTTCATAGCTGAAGACATAAGCATTCTTTAAAAGCCTGTCTTGCCCTGTATGGCCCAGGCTGCCTGGAACTCAGAATCTTTGTGCCTCCCTCCTAGAGAGCCCAGATTACAGGTGTGAACTATCATACTCGTCTAGAACTTAAAACCAACAGTGTCGTTTGTTTTAAGCATTAGTTATGACTTTTATTATCTAGTACTCAAATACAGAGACATCAGAAAACATGGAATCTGGGTGTGCTGGCTAACTCTGGCACACCAGAGTCTGAGATAGGAGAATCGCCATGAGGACATCCTGGGCTACATTATGATTTCAAGGCCAACCTGGCTACAGTGACACATTGTTAAATTTGGGCTTAGGAACATGAAAACATCTATGTACTAGCTGTTGTGCTCAAGTTCTAGGAAATATTTCTTCATACATTTGTGTATAATTTTTCTTACATTTTAACAGTATGCATATATGGTTTTTGCTATTTTAAAAGTAGAACTTGTGTGTTCTCTATGGGTACCATTGAAATTCTTAGCTTCTTGGTACACCTCTTGAAGTACTTTTTTAAAAAAAGCCTGTTGCTTGTTCTTTTAAATCAATGTAATGATTATTGTTAATGTTGGCATGCTTTTTAAG
Seq C2 exon
GTCACAACCATGTCGGACAAAAGTGATTTAAAAGCTGAGTTGGAACGTAAGAAGCAACGGTTGGCCCAAATCAGAGAAGAAAAGAAGAGGAAAGAAGAGGAAAGGAAAAAAAAGGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000027012-Dync1i2:NM_010064:1
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=1.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF111503=DUF2927=PU(41.8=91.7)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: