MmuINT0054181 @ mm10
Intron Retention
Gene
ENSMUSG00000027012 | Dync1i2
Description
dynein cytoplasmic 1 intermediate chain 2 [Source:MGI Symbol;Acc:MGI:107750]
Coordinates
chr2:71211834-71214555:+
Coord C1 exon
chr2:71211834-71212074
Coord A exon
chr2:71212075-71214438
Coord C2 exon
chr2:71214439-71214555
Length
2364 bp
Sequences
Splice sites
5' ss Seq
CAGGTCGGT
5' ss Score
7.53
3' ss Seq
ATGTTGGCATGCTTTTTAAGGTC
3' ss Score
8.04
Exon sequences
Seq C1 exon
GTTTTACAAAAGGTAAGTCACGGAGAGGCCGCCCCTCTGCGCTGGGCGGCAAAGACTCTGATTCTGTGTGAGACCGCGTCTCGGCGCAGCCATTTGTCCCTCGGCTCTCGCCGTAGCGGCCGCCGCCCATCCCTCTTTGTGTGCTTGGGACGCCGCGGATCTGCGGCGGCGACAGTTGGAGAGGGACGTTCCCGGGAAGTTACCGGCCAGAGAAAGCGATCTCCACTCCGCCACCTGACAG
Seq A exon
GTCGGTCGGCCGCGCTTCCTTCAAGTCCCTTTTGCCTCTGATGGCCGCTTTGGAGCTCGTAGGGCCGCCCGGCCGATATTCTGACAGCGCCGGCCCGGGTGACTCAAAGCGGCCTGGGGAGGCCACCAGGGCCCTTGGCAACCCTTCGGGACCCTCCGCAGGCGGCCTGGACCCTCGGGATTTGTCCTGCACCCGTCTGGTGGACCTCGGACACACCCCAGCCCGGACCGCACCCTCTTGGCCTTAAGCCTAGGGAGAAAGTAATTCCTTAAGCTTTGCTTGGTTTTTATTAATAAAGATCACTACTACTTGGGTCAGTAGCAATGACCAGGCACCTAGCGTGTGTGTTGGAGGTCTCTGAACACTGTGATTGTAAACATCATTCTAGACACTTTCCTTTTTCCGGAGTTTTAAGAAAATGAACCTGTCAGTCACGGAGCAGAGGCCCTGACCTGTCTGATAATGAGGGAGCTAACTGATCGCCCGTGCTTCAGCGGGACAAAATAGTTAGAGTTGAAGGAAGAAGTATTTCTTCAAACTAGATTCCAGGCAGTATTGGTATATTGTTGACAATTGGTCCTAAACAGAAAATAATATGTATTATTTATCATACATAATACAAAAAAAAATCATACAGAGTGATGTGTATGGAAACTTTCTTCAACAGCCCTTACAGTATGAAGCTTTTTAGAGACCTGAAAAGAGTGGGTGAAGAAACACGAGCTTTGCTTTGCGAGTTTGTTCAAATGACTTGGTTGGGAGTATATATAAGAGTGTATATTCTAGCTGCATATGTATCAAAAGATGGCCTAGTCGGCCATCACTGGAAAGAGAGGCCCATTGGATACGCAAACATTGTATGCCCCAGTACAGGGGAACGCCAGGGCCAAAAAGGGGGAGTGGGTGGGTAGGGGAGTGGGGGTGGGTGGGTATGGGGGACTTTTGGTATAGCATTGGAAATGTAAATGAGCTAAATACCTAATAAAAAATGGAAAAAAAAGTGTATATTAAAGGGATTTCCTGTTACTTGCTCACTAGTTTTTGCCCACTGTCCTGTCTTTCTGAAGTACGCTACCAAGAATTCTCCCTTTTTCATTTACATAGAAGAATGTTTTTCATTTTCATAGATGAATTTTTCCTCCTTACCAAATTTGCCCTTAATCCAACTTTATTGTGATCCTAAGAGATTCCTAGACTTTTCAAGAGGTTATTAACCCAGTTTCCTTAATCAAAAGCATTTAATCCTGCAGTTGTATGGAGAGAGACACTGACAAAGGTTGAACCAGTAATGTAGAGAAGGTAACAAGGTCCTGGCTCCTACCTTACATTGAGTCCCTAGGTTACCTTTCCAGTTCAGAAAGCTCCTCGTTCCTCCCTCCCTCCTGCATAACAGTCAGTATGAGGACACGCTTGTGTTCGTAATCCCATCTACTTTGCAGATGGATCGTTTAGCAGCTGTGAGCTCAGTGTTAAGGTTGCTATGCTGTGAAGGTAACAAAAACCATAAAAACACAGCCCCCAACTCATCCAGATGACTATCTACCATGGAACATTTCAGGCCCATATAGATAATCATAAGAATGCCACAAGAAGGTGTTAGGTGGAAATATACTGTTTGATTGATTGTCATGGAACATCTATAGAATTTAAAAGAATTTTTAGGAACTTCCTGTTTAGCTATTCAGTGTTTTATTAAGTTTCTGGGAACAAAACACAGACATCTCTGGTAATAGTTTTGGTTTCATAGCTGAAGACATAAGCATTCTTTAAAAGCCTGTCTTGCCCTGTATGGCCCAGGCTGCCTGGAACTCAGAATCTTTGTGCCTCCCTCCTAGAGAGCCCAGATTACAGGTGTGAACTATCATACTCGTCTAGAACTTAAAACCAACAGTGTCGTTTGTTTTAAGCATTAGTTATGACTTTTATTATCTAGTACTCAAATACAGAGACATCAGAAAACATGGAATCTGGGTGTGCTGGCTAACTCTGGCACACCAGAGTCTGAGATAGGAGAATCGCCATGAGGACATCCTGGGCTACATTATGATTTCAAGGCCAACCTGGCTACAGTGACACATTGTTAAATTTGGGCTTAGGAACATGAAAACATCTATGTACTAGCTGTTGTGCTCAAGTTCTAGGAAATATTTCTTCATACATTTGTGTATAATTTTTCTTACATTTTAACAGTATGCATATATGGTTTTTGCTATTTTAAAAGTAGAACTTGTGTGTTCTCTATGGGTACCATTGAAATTCTTAGCTTCTTGGTACACCTCTTGAAGTACTTTTTTAAAAAAAGCCTGTTGCTTGTTCTTTTAAATCAATGTAATGATTATTGTTAATGTTGGCATGCTTTTTAAG
Seq C2 exon
GTCACAACCATGTCGGACAAAAGTGATTTAAAAGCTGAGTTGGAACGTAAGAAGCAACGGTTGGCCCAAATCAGAGAAGAAAAGAAGAGGAAAGAAGAGGAAAGGAAAAAAAAGGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000027012:ENSMUST00000081710:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=1.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types