HsaINT0053154 @ hg19
Intron Retention
Gene
ENSG00000077380 | DYNC1I2
Description
dynein, cytoplasmic 1, intermediate chain 2 [Source:HGNC Symbol;Acc:2964]
Coordinates
chr2:172543982-172546773:+
Coord C1 exon
chr2:172543982-172544137
Coord A exon
chr2:172544138-172546656
Coord C2 exon
chr2:172546657-172546773
Length
2519 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGT
5' ss Score
10.86
3' ss Seq
AATGATTATATGTTTCTAAGGTC
3' ss Score
5.79
Exon sequences
Seq C1 exon
CTCGATCGTGTCAGTTTGTAAGGCGAGGGCGGAAGTTGGATTCCTGGCCTGAGAATATTAGGCGTAGTTTTCCAGTTTTTGGCAAAGCGGAAATACTTAAGGCCCCTGGGTTGACTGGGTTCTTTGTTTTATCTACCGGCTTCTGCTTTACGACAG
Seq A exon
GTAAGTCACGGAGGGGCTACAATTCCTCGCAGCAGGGCCCCACCTTTTATTTCTGGGAGCGACCTCGTTCTGGTGAGGCTATTTGTCCCTAAGCTCTCGCCGTAGCAGCCGCCGCCCATCCCTCTTTGTGTGCTTTGGAAAGCCGCGGAGCTGGTGGTGGCTACAGTTGGTGTTGGGGGCTTAGGCGAGGGACGTTACCGGGAAGTTGCAGGCGGGAGGACTCTTCCCCATCCAGTCACCTGACAGGTGGGTTGACTGTTCTTCCCTCAAGGCCTCCCTGCCTGTGTTCCACGTCGCAACTCGAAGGGCGGCTTGGCAGTTCCTGCTGACATCCCCGCCCGGCCCAGCTTTGGGGAGGAAAGGCGGGGAGACCTGGGTGCGGTGACTCATTGCGGCCCGGCGAGAGGAGTCCACTCCTTTCCCTTCTCGACCCTCCAGAGGCGGCCTGGGGAGCCTTGAGGCTTGTCCGGCGCCCACTGGCTTCTTCCGGACGCCCTGCCGTGGACCGCGCCCTCTTGGCCGTGACCCCAGGGGAGAAAGTGATTCGTTTTCGCCTTGCCCCATTTTACAAATTAAGGCCATCTCTACTTGCCTTGATAGTGTCTCCCCTCACCTTATGTGTGATGGAAAGCCCCCGAACACGGAGGTTCTAGCACAAAACTCTAGAGACTCTCTTCTCTTGAGTTTTAAGAACGTGAACATGTCGGTCATGGAGGAAGGCTCTGGCTTCTGTGAGGATGAGAGGATTGGTCAGCTGTAGTTCAGCTGGTCAAGACTTTGTTGTTGGGCTTTAAAAATGCGCTTATTTTAATATCAATTAGTGTTGGTATATCTGTTTTACAGTTGACGTTGAACAAAATATAATGTGCCTAGCGTAGCATACAGTTACGTATGGAAGTTCTCTTCACCAGCCGTTTGTATGGAGCTGTTTAGAGGTGTAGAAAGAGTGGAATAAGAAACACGGTCTCTTGCTTTTAGTTTGTTCAAACAAATCTTGGAAGATATTGTGTATATATTTCAGGTCTGCTATGTCAACTTTTCATCCTTTTCGTATGCTTGAAAATTATCAATTCGCTTGCCAGTCTTAATGGAGTTTAGTAGCTGAAATTTCCTTTATCCACTTCTTAGTAGGTGAATTTCTCCTCTTGACTGACTTACCTTTGTTCAGATTTAACAATTGTGCTTTTTAAGAGATTTCCCCTAACCTCTGGAAATACAGTTTTCCAGAGGTTATTCTCCTAGTTTTCTTGATCTAAAGCATTTAATACTTCACTTGTACAGAGACATTGAAAGAGATTGATCATTAGGCAATAAGTCAATCATGTGGAGAAGGTAAGGAGTTCCTGGCTCCTGCCTTATGCTCAGCTGCTAGGCTACTTAAAAAAAAAAAATCCTAATTCATTATTTCTTCCTAAAACTCAAGCTGAAGTAGTGTTTATGCAATTGGTTTTTGAAGCTCAGATTGTAATTGTGTCTACCGTATCCATTATTCATTAGCCAGTGTCAATTGTAATGTTAAGGTCATTCTGCTGGATGTTGTGAAGGCAACAAAAATAACTAAAAAACAGTCCCTGATTTCAAGTACATTACAATCTAATAGGGAACATTTCAGGTATGTCCACAAATAATTGTACTAAAAGTGCCATCAGAGGTATACGTAAGGTGTTATTGTGGAGAAATACAGTCATATGATTTGATAGCTAATGATGGTAACTCCTGCGTTTTGCTTTAGTATTACTACAGCACTTTTAGAACTTACAGGAAAGTTCAGTTTGACCTATTGTTTTTTATCAAGTTTCTATGAATGCAATAGAATTGGTAATAGTTTTGATCTGTGTCATATAGCTTAAGAGCTTCTAAATGCCAAACCATGTCCTCTGTTTTAAGAGCCAGTTTTGACCTTTATCTTGGGTACCTAATATATTGTCATCAAAAACTTTGAGACATTGTGTTCAGTTTGTGTATGCGAACATTAAAGTGCTTACTATGGGCTAGCTACTATGCTCAGCTCTAGGTAATATTTATTATATATATTTGTTTATACATTTTTTAAGTCTTAGTAATAATATATATGCTTCCTTTATTTTATCTTTTAAAAGTTTATTTTTTAGAGACGCTCTGTTGCCCAAGCTGGAGTGCAGTGGCATGATCACGGCTCACTGCAGCCTTGACTTCCTGGGCTCCAGCAATCCTTCCAAGTAGTTGGGACTACAGGCACATGCCACCATGCCGCCTAATTTTTTATTTTTCTTGCCTTTTTTTTTTTTTTTTTTTTTTTTGTAGAGATGGGGTCTTGCTTTGTTGCCCAGGCTGGTCTCAAACTCATGGCCTGAAGCAGTTCTCCCACTTTAGCCTCCCAAAGTAAGCTACTGCCCAGCCCCATTATTTTAAAAGTAAGGTTTTTGTGCTTTTTTGAGATAGCATTGAACTATATGGCCTTTCGGGACAGTTCTCTTCTTGGAACACTAGTTTTTTCAACTGTGCTGCTTTTACTAACATAATGATTATATGTTTCTAAG
Seq C2 exon
GTCACAAACATGTCAGACAAAAGTGAATTAAAGGCTGAGTTGGAACGTAAGAAGCAGCGACTGGCCCAAATCAGAGAGGAAAAGAAGAGAAAAGAAGAAGAAAGGAAAAAAAAAGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000077380-DYNC1I2:NM_001378:1
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.993
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF142651=DUF4355=PU(39.8=97.2),PF055057=Ebola_NP=PU(23.6=91.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
ENSP00000263811, ENSP00000339430, ENSP00000350692, ENSP00000380308, ENSP00000386397, ENSP00000386415, ENSP00000386522, ENSP00000386591, ENSP00000386886, ENSP00000388699, ENSP00000392741, ENSP00000394492, ENSP00000397654, ENSP00000398765, ENSP00000401005, ENSP00000405454, ENSP00000406104, ENSP00000409951, ENSP00000410807, ENSP00000415410, ENSP00000423339, ENSP00000433791
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)