DreINT0060574 @ danRer10
Intron Retention
Gene
ENSDARG00000103195 | dync1i2b
Description
dynein, cytoplasmic 1, intermediate chain 2b [Source:ZFIN;Acc:ZDB-GENE-090121-1]
Coordinates
chr6:3781214-3782137:+
Coord C1 exon
chr6:3781214-3781273
Coord A exon
chr6:3781274-3782021
Coord C2 exon
chr6:3782022-3782137
Length
748 bp
Sequences
Splice sites
5' ss Seq
CGGGTACTG
5' ss Score
5.43
3' ss Seq
AGTTTGCTGTATTTCTGCAGACG
3' ss Score
6.99
Exon sequences
Seq C1 exon
GACTCTTCACTGGGACTCTGATCCTTCTACTCTACTGCTCCATTCAGACTCTCAGCTCGG
Seq A exon
GTACTGCTGTCTCTCTCTCATTAACATCACTCGACTTCTGTTTACCCTCCTCTCCTTCATTTATCCTTCTGTCACACTCGTCCTCTCACTCTTGCTGTCTTTCTTTCTTCACGGACCGTCATGGTTAACCAATCAGCGGATTGTGTATGAATATGACGTGAATTACATTTTCAAGTGAAAACCCTTGCAAACTAAATCTGTTAGTATATTTTAGAGCATTTATTCGCTGCTGGAAAGCCTACGGTGAATATAGTTACTTTTTTATTTGATCATTTCTTATTCCTTCTATGACATAGAAAATTCTGTATAATTTTGCCGGGCTTCAACCTTTTGTTTTGACTTTCACAAACCTGCAATTCACATACTTCTTATAAGGACATATCATCATCCCTCAGGAAATGGGTTTCTAGGTTTTATATGTGCATAAATACATGTTTATTACTATTTAATTAATAAAAAAACATATTATATGTAAATTGATTTATTTGGTATTTATTTATTGTGATTAATTAGTTCATACTAATTAATGGATTAGTTTTTAAATAATGTTTAAAATCTTTAATCCAATATTATTAATTATTTGCTTTTATTATTTGTTTTTAAAGATAAAAAGAATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATAAAAATGTAATTATTAATTTTGGTCTAAACATAGTTTGCTGTATTTCTGCAG
Seq C2 exon
ACGTGGCCCGCTTAAGTTGGGCATGTCGAAGGTCACACAGGTGGACTTTCCTCCTAAAGAGATGGTGTCGTACTCAAAAGAGACCCAGACACCCACACAGACTCATCACAAAGAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000103195:ENSDART00000159673:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=1.000
Domain overlap (PFAM):
C1:
PF115403=Dynein_IC2=PU(0.1=0.0)
A:
NA
C2:
PF115403=Dynein_IC2=WD(100=82.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]