HsaINT0053167 @ hg38
Intron Retention
Gene
ENSG00000077380 | DYNC1I2
Description
dynein cytoplasmic 1 intermediate chain 2 [Source:HGNC Symbol;Acc:HGNC:2964]
Coordinates
chr2:171712767-171715443:+
Coord C1 exon
chr2:171712767-171712826
Coord A exon
chr2:171712827-171715327
Coord C2 exon
chr2:171715328-171715443
Length
2501 bp
Sequences
Splice sites
5' ss Seq
GGGGTATTG
5' ss Score
2.65
3' ss Seq
TTTGTATTTACTTAATTTAGACG
3' ss Score
4.24
Exon sequences
Seq C1 exon
GACGCTGCATTGGGATACAGATCCATCAGTTCTTCAGCTTCACTCAGATTCCGATTTGGG
Seq A exon
GTATTGAATAGATTTTTTACCTTCCCTGTTTTATAATGAATTTGATTCTTTGTGAAACTGTCCTAATTTTATTTTGCTTAAGTTTATAATATTGTATCACGTAGTAAGGACAAGAGTTATATTTTACTGTGACACCTCATTTATCCAGTATCTTTAGTGAAAGAATATTCTGTGTGATGTTCTATGTACCCTGAGTCCATTTAAGTGTCCAAATGTTTAAAATTATTTCTATGTTTTTAATACAAGTTTTGTAGGATGTATTAAAAAACTTCTCAGACTTCTTCTAATATTCTACATGTAATTGAACCTTTTCAGGGTTACTTGATATGAATATTAATTTATTTTTCTGTATTAAAATTCACTGATGATTTCTAAGATTTTGAGAATAATGGAGATGCTGGTCCTTACACTGTTCATTCATTCATTACTATTTATTCATGAATCTAGAATAAAACTATTCATGAATCTAGAATAAATAAATGAGTGAATGAATGGATTAATAGATTATTCATAGAATGTATGGATGAATATTCTTAATATAATTGTCATTGAGCCCCTAGGTTAAATAAATAGGTTCTTTTCTTTCTTCCTTTTATTTTTGTTTTGTTTTTTGCTTTTTTTTTTGGCATATTTTCTTAGTGAAACGTTAGAAAACTAATGCTTTATAGTTTCTGTATGTCTCTTTTTTAGAGTTTTAAAACTTGTTCTTTTAGAAGTTAGTGTTGTAAGCTGTATGTATGGTTTTTTAATTTTGTTGACATAGAGATAAGATTATCCATCCATTCATTCATTCAGTTATTTATTCTAGATTCTAATGCAAATTATAAATGTTTGCTGCTGCCATTTTGCCTGACTCAGATAGCCCTTTTCCCCTGATAATTTACAGCTTCAAAAACATATGAATATACCTTTTGGAATTGTGTCTAAAGTAAGGTAAATAAGCCTTGATTTGAGGCATGTAAGAAAAATATATGAGTTTCTTGTACTTGAACTGGAAGCCCTCTGTAGTGGCCACACTGAGGCTTCCCCCTCCTGCCTCCCATTGCTTCCTTATTTTCAGTAAAAGTGGCTTTTGGATAAGTGAGGTATTACTTCCCTACCCACCTCCTCCTATAAAATCTTGGAATATTTCGTTTGTTTAGTATTATGGTTTTTTCTGTTAGACTCTGTATGCATTCAAGTTGGTAATTGATTCCTAATATTGTTGGCTTGACGATTTTTTTCCAGCTATGTGAGTGATTTACTTTTTATATAATTTGCATCTTAAAAATCAGAATATAAAGTTTCTTATTTCAAATTTTATTCTTAGACTTCTAGATTACTTCAGATTACTTAAATTGTCCACTTAATTCTTTGACTATACTTTTTTTTTCCCTTTCTTTTTTATTTCTAAACTAGAAAAGACATTAAAAAATTGTTATGGCCCACATTTTGGAACATTAATTTTTAAAATGTACTAATTTTATTATACTTTATAGTACTTTGTTATGCTTTATTAGATTGTATAGGACTTGGATTTAGTTACTAAATAGAACTGAAAAGAATATTTATATAAGAAAAAAGTTATATTACCAGCGATAGCCTGCTTTATATTCTGAAAGTTGCAGCAGTGTCTTTATTGTATATCCTTTTAAGGCAGCTTCATCACTGAGAACTTTTTTGGGAGTCTGGAAGCGTACTTTATTTGGTTTAGGATTTAAACATCTAATAAAACCAATAAAAGATCTCCCAGATAGCTAATAAAATATATTTTTCTTTTGGTTCATTTTCCTCAGCCACAGCTCTCTTCCATTGTCAAAAAAGAATGTATACCCTGTATTTCTAAACAGAAGTGACTTTAGTAGATTTATGGTATTCAAAAGATCTGTCACTTTAGTCTAAGTGTAGAATATCTGGACCTTAGTTTCTCCATAATGTGAATCAAGGACAGTATTGATCATGCAGAGATTAGAGATTTAAAAGTTTTAAATATTTCATTTTAAAGTCCAAATTGATAGTGTAATTCTCAATTTCTGCCAAATATAAGTAGAAAAAAAGCTTTCAACAGAAACCTGTTTTTCAGTCGTAAAGCTGAATTCTCCTAGTGGCACAATCAGCTAAATGTGGTCTGAGTGATATCTAGTCTGATTCTTAAAAAAAAGTCCAGAAAGAACCATATCCCAGCTGAAACCAGTTCTTACGACAACCTTATTCAGTGGTCCACTCTGAAGTTCCTATTCTCTTACTTCATTATTGCCCGCACATTTGTTCTAAAAAAATGAAATTACTTGCCTTTTTAAAATGAAAATAAAAACACTGAATGATTCAGAAATATCTTTTGCTTTTGCTACCTTCTCATTCTTTTGCTAAAATAAAGCCAATTTATTGTTAATCTAAAATTTCTTGAATAAAATGGATTGAAATTACAATGTTGGGTGCAAATGACTGTTTAATTCTTAATTTTTGAAAATAACATGGTTTGATGTAGTTAAAATTGTGTTGTTTGTATTTACTTAATTTAG
Seq C2 exon
ACGAGGACCTATTAAACTTGGAATGGCTAAAATCACGCAAGTCGACTTTCCTCCTCGAGAAATTGTCACGTATACAAAGGAAACTCAGACTCCAGTTATGGCTCAACCCAAAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000077380:ENST00000397119:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.878
Domain overlap (PFAM):
C1:
PF115403=Dynein_IC2=PU(0.1=0.0)
A:
NA
C2:
PF115403=Dynein_IC2=WD(100=82.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development