DreINT0066871 @ danRer10
Intron Retention
Gene
ENSDARG00000089357 | fam73b
Description
family with sequence similarity 73, member B [Source:ZFIN;Acc:ZDB-GENE-050320-135]
Coordinates
chr21:3703624-3705989:+
Coord C1 exon
chr21:3703624-3703745
Coord A exon
chr21:3703746-3705871
Coord C2 exon
chr21:3705872-3705989
Length
2126 bp
Sequences
Splice sites
5' ss Seq
TCGGTGAGT
5' ss Score
11.11
3' ss Seq
TGATGCTTATTGATTTCCAGCCC
3' ss Score
6.43
Exon sequences
Seq C1 exon
GTATGGAGCTGTTTGAAGAAGCCTTGAGGAAGTGGGAGCTGGCTCTGAACATCAGGCACAGGTCTCACTCTCATGCTTCGGCCTCCAACAGTCAGGGTTCAGAGCTTGTGGAGCGACATTCG
Seq A exon
GTGAGTCTTCAGAAACATCACCATAGATGCTAAAGCTAAATAAAAACTCACCAGCTGTGCTTCCATCCTATGATCTGAAGTATGTTTAAAACTGCAAAACTGTAATACTGCATAAACTATTTGCTAATAAAGCAGCGCTTCCATACAGGGAGCCAAAGAGAACAAAATCGGCACAACTGGTGGCAAATATCAGATAGAAAATAGAGCCACTGCGGGCCTTTTTTTGTATATATAATAAATGAGTTGCACCTTAATGAACACAAGAGGGTGGCTTTTGGAGGTTTGAGACGCTCTGAGCGAGATCACTTCTCTTCCTGTAAACTGAACTGCCGCATCATTGAGGATATAAGCGTGCTTCGGTTCAGAAGGCAAAACGCAGCATTAGTGGAGGTCATCTGGGAAGAGGGGAAGGGGGGCGACCATTCTTCGCGCATGGTCCAAGGCAACGGTGCCTAATGAGAGAACGCCCTTTTTATGTTGCTTGGCAACCACTAAATCAGCTGCGTATTGTGCACTGTTGATATTTTTATAACTTGAAACCAGGACCACTAGTCTCTCCACTATCCTGAAAATTCTCTTGACAACACAAACACAGCTGTCACCTCAGAGGAAATCCTGCTTTGCTTTCATTTGATTGGAGAATGAAAAAGATGCGACTGATGTAAAATGTTCGGTGTGATCAAGGCCTAGCTAGCAGTTTTTGACTGTTCTGATTGGCTCCTCCCTCAGATACGAGTCCCCTCCTCTCCTAACCAATCAGTGAACGCTGGGGCAGCATGGGATCATAATACTGAACCATTGTGATGACAGACTTTGGCTGAGGGATTTTAGACCAAAACAACATTTCAGGGGCCTCATGTACGAAGACTTGCGTGGAAATTCATACTAAAACATTGCTTACGCACAAAGCTGTAAATGTGCGTACGCAGAAAAAAATTCAGATGTATGAAACACTGCGTACGCCGAATCCCACGCATATTCTTTGTACATCCGAATGAACGTGAAACTGAGCGCAACATGCACAAGCGCAAAACTATCACGAGGAAGACAAGTAGGAATCATTAATAAGTCTGTGCATCATATTTTATTTGCACATTTATTGAATGGAAATGTTTCTGATTCACGCATGCAAATTCATCTTCAGATAGTGTCTTTATAGCAATGTGCGTCCAGCAGATTGCTCCGATTACATTGGGAAAACCGGCGATCGCTGCAAATTGCGCTTTAATGTTTGGCTGGTCAACTGTATGGTATGGAAACCTTATATACCTGCTAGATGAACCCGTCTCATACAGCTGCCATTGCAAGGCTCAGACACTTTGTAGTGTGCTATTTAACACAACTGCCTCTAGGAGTCGCCAATGGAAATAAAACAGACACGCACAAAAAATGTGCGTATGCCAGCCATGAAGCTGGCGTGGAGCTGCGCACATTCCCACGTTCATTTCATCGTTAGTAAATCCAAACGTGAGCGATTATAAGCGTGAAACCTGGCGTACGCAAAGTTTTTGTGCGTACGCAGCGTTGATACATGAGGCCCCAGATGTTTTACAGTGTTCTCAAACACTGCTTTGTCCATAAATGACATCCCATCATGCCTATTTTTGTTATCAGGTCTAAATCACGACTTTTTTTTTTATTTGCATGCTGGAATTTATTCAGTAAATCAGTTTCCATTGTAGTTTCTGCAGATTTTTCTTTCTGTTTTATTTTCTTTATTATTATTATTATCATCATCATTTATTTGTTTATTTTTCTTTGGCTTAGTCTCTTATTTATCAATGGTCGCCACAGTGAAATGGACCATCAACTATTCTGCCATATGTTTTTACGATATGGATGCCCTTCCAACCGCCCAGTACTCATACTTAACTCACTCTCGTACATTACAGCCATTTAAGTTAGTCCAGTTCACCTATAGCGCATGTGTTTGGCGAATCCGGAGCACCCGGAAGAAACCCACCCCAACACGGGGAGAACATGCAAACTCCAGTCAGAAATGCCAACTGACCAACCTGGGACTCAATCCAGCGAACTTCATGCTGTGTGGTCACATTTTTGTGAAACATTTCAAAATGCGCATATAAATAGGTGGATGTAAACTAATGATGCTTATTGATTTCCAG
Seq C2 exon
CCCGAAGTTCGTAATCATCAGTTTGCAGAGAAGCTGGAGACTCTGCTGCACAGAGCTTATCATCTGCAGGAGGACTTCGGCAGCACAATCCCACCTGACAGTCTGCTTGCAGATCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000089357:ENSDART00000122699:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.463 A=NA C2=0.175
Domain overlap (PFAM):
C1:
PF102654=DUF2217=FE(8.8=100)
A:
NA
C2:
PF102654=DUF2217=FE(8.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]